This gene encodes an essential component of the N-methyl-D-aspartate (NMDA) receptor signaling complex which mediates long-term potentiation in synapses by linking activation of NMDA receptor to alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor trafficking. The encoded protein contains an N-terminal GTPase-like domain, a pleckstrin homology domain, an ArfGAP domain and several C-terminal ankryn repeat domains. [provided by RefSeq, Apr 2017]
Transcription factors with Perturb-seq knockdown data for AGAP3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = AGAP3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of AGAP3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:150,876,795–150,877,753 | 209.4 kb | Distal (>10kb) Multiome | 396 | |
| chr7:150,973,967–150,975,352 | 111.7 kb | Distal (>10kb) Multiome | 572 | |
| chr7:150,977,414–150,979,693 | 108.1 kb | Distal (>10kb) Multiome | 629 | |
| chr7:150,988,543–150,989,168 | 97.7 kb | Distal (>10kb) Multiome | 348 | |
| chr7:151,007,679–151,009,192 | 77.8 kb | Distal (>10kb) Multiome | 693 | |
| chr7:151,012,895–151,014,461 | 72.6 kb | Distal (>10kb) Multiome | 414 | |
| chr7:151,017,863–151,019,302 | 68.0 kb | Distal (>10kb) Multiome | 677 | |
| chr7:151,026,724–151,029,117 | 58.0 kb | Distal (>10kb) Multiome | 1003 | |
| chr7:151,050,894–151,051,476 | 35.2 kb | Distal (>10kb) Multiome | 289 | |
| chr7:151,057,294–151,063,500 | 26.8 kb | Distal (>10kb) Multiome | 1138 | |
| chr7:151,076,890–151,077,133 | 8.7 kb | Proximal (<10kb) | 232 | |
| chr7:151,078,687–151,079,073 | 6.8 kb | Proximal (<10kb) | 103 | |
| chr7:151,080,217–151,081,897 | 5.6 kb | Proximal (<10kb) Multiome | 909 | |
| chr7:151,083,053–151,083,998 | 3.0 kb | Proximal (<10kb) Multiome | 581 | |
| chr7:151,085,505–151,086,758 | 307 bp | At TSS Multiome | 774 | |
| chr7:151,087,034–151,087,952 | 1.2 kb | Proximal (<10kb) | 650 | |
| chr7:151,110,933–151,111,501 | 24.7 kb | Distal (>10kb) Multiome | 365 | |
| chr7:151,114,416–151,115,951 | 29.0 kb | Distal (>10kb) Multiome | 279 | |
| chr7:151,123,775–151,124,402 | 37.6 kb | Distal (>10kb) Multiome | 399 | |
| chr7:151,125,352–151,126,446 | 39.5 kb | Distal (>10kb) Multiome | 283 | |
| chr7:151,166,900–151,168,657 | 81.8 kb | Distal (>10kb) Multiome | 533 | |
| chr7:151,172,589–151,173,067 | 86.3 kb | Distal (>10kb) Multiome | 592 | |
| chr7:151,226,743–151,227,948 | 140.9 kb | Distal (>10kb) Multiome | 820 | |
| chr7:151,232,039–151,233,087 | 146.0 kb | Distal (>10kb) Multiome | 692 | |
| chr7:151,244,849–151,245,940 | 159.2 kb | Distal (>10kb) Multiome | 325 | |
| chr7:151,247,809–151,249,951 | 162.3 kb | Distal (>10kb) Multiome | 522 | |
| chr7:151,251,506–151,252,414 | 165.5 kb | Distal (>10kb) Multiome | 448 | |
| chr7:151,259,810–151,260,360 | 173.6 kb | Distal (>10kb) Multiome | 135 | |
| chr7:151,275,718–151,276,602 | 189.8 kb | Distal (>10kb) Multiome | 99 | |
| chr7:151,276,919–151,277,487 | 190.8 kb | Distal (>10kb) Multiome | 367 | |
| chr7:151,303,363–151,304,005 | 217.2 kb | Distal (>10kb) Multiome | 458 | |
| chr7:151,306,906–151,307,424 | 220.6 kb | Distal (>10kb) Multiome | 60 | |
| chr7:151,341,187–151,342,118 | 255.2 kb | Distal (>10kb) Multiome | 757 |
Genomic view of the AGAP3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.