Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Located in membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CHPF2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CHPF2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CHPF2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:150,973,967–150,975,352 | 257.7 kb | Distal (>10kb) Multiome | 572 | |
| chr7:150,977,414–150,979,693 | 254.1 kb | Distal (>10kb) Multiome | 629 | |
| chr7:150,988,543–150,989,168 | 243.7 kb | Distal (>10kb) Multiome | 348 | |
| chr7:151,007,679–151,009,192 | 223.8 kb | Distal (>10kb) Multiome | 693 | |
| chr7:151,012,895–151,014,461 | 218.6 kb | Distal (>10kb) Multiome | 414 | |
| chr7:151,017,863–151,019,302 | 214.1 kb | Distal (>10kb) Multiome | 677 | |
| chr7:151,026,724–151,029,117 | 204.0 kb | Distal (>10kb) Multiome | 1003 | |
| chr7:151,050,894–151,051,476 | 181.2 kb | Distal (>10kb) Multiome | 289 | |
| chr7:151,057,294–151,063,500 | 172.8 kb | Distal (>10kb) Multiome | 1138 | |
| chr7:151,080,217–151,081,897 | 151.6 kb | Distal (>10kb) Multiome | 909 | |
| chr7:151,083,053–151,083,998 | 149.0 kb | Distal (>10kb) Multiome | 581 | |
| chr7:151,085,505–151,086,758 | 146.3 kb | Distal (>10kb) Multiome | 774 | |
| chr7:151,110,933–151,111,501 | 121.3 kb | Distal (>10kb) Multiome | 365 | |
| chr7:151,114,416–151,115,951 | 117.0 kb | Distal (>10kb) Multiome | 279 | |
| chr7:151,123,775–151,124,402 | 108.4 kb | Distal (>10kb) Multiome | 399 | |
| chr7:151,125,352–151,126,446 | 106.6 kb | Distal (>10kb) Multiome | 283 | |
| chr7:151,166,900–151,168,657 | 64.2 kb | Distal (>10kb) Multiome | 533 | |
| chr7:151,172,589–151,173,067 | 59.7 kb | Distal (>10kb) Multiome | 592 | |
| chr7:151,226,743–151,227,948 | 5.1 kb | Proximal (<10kb) Multiome | 820 | |
| chr7:151,232,039–151,233,087 | 13 bp | At TSS Multiome | 692 | |
| chr7:151,244,849–151,245,940 | 13.2 kb | Distal (>10kb) Multiome | 325 | |
| chr7:151,247,809–151,249,951 | 16.3 kb | Distal (>10kb) Multiome | 522 | |
| chr7:151,251,506–151,252,414 | 19.5 kb | Distal (>10kb) Multiome | 448 | |
| chr7:151,259,810–151,260,360 | 27.6 kb | Distal (>10kb) Multiome | 135 | |
| chr7:151,275,718–151,276,602 | 43.8 kb | Distal (>10kb) Multiome | 99 | |
| chr7:151,276,919–151,277,487 | 44.8 kb | Distal (>10kb) Multiome | 367 | |
| chr7:151,303,363–151,304,005 | 71.2 kb | Distal (>10kb) Multiome HiCAR | 458 | |
| chr7:151,306,906–151,307,424 | 74.6 kb | Distal (>10kb) Multiome HiCAR | 60 | |
| chr7:151,341,187–151,342,118 | 109.2 kb | Distal (>10kb) Multiome | 757 | |
| chr7:151,408,879–151,410,989 | 177.6 kb | Distal (>10kb) Multiome | 407 | |
| chr7:151,439,682–151,441,031 | 207.6 kb | Distal (>10kb) Multiome | 189 | |
| chr7:151,448,171–151,448,932 | 216.2 kb | Distal (>10kb) Multiome | 403 | |
| chr7:151,519,052–151,521,056 | 287.6 kb | Distal (>10kb) Multiome | 899 |
Genomic view of the CHPF2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.