chr6 : 157,889,727 157,890,344
617 bp 81 TFs 4 linked genes
This 617 bp open chromatin element is linked to 4 target genes and is bound by 81 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SNX9 66.8 kb Distal Multiome
SYNJ2 91.8 kb Distal Multiome
SERAC1 278.2 kb Distal Multiome
GTF2H5 278.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:157,884,727 – 157,895,344
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP K562 ENCFF751HCS 284 bp overlap
ATF2 5 datasets
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 223 bp overlap
ChIP HepG2 ENCFF955VER 371 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 248 bp overlap
ChIP K562 ENCFF139ZZG 391 bp overlap
ATF3 1 dataset
Motif DE_72h DE_72h-ATF3_MA0605.3 10 bp overlap
ATF7 1 dataset
Motif DE_72h DE_72h-ATF7_MA0834.2 10 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BCL11A 3 datasets
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 100 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 67 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 124 bp overlap
CREB1 1 dataset
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
CTCF 5 datasets
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 196 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 236 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 236 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 358 bp overlap
ChIP endodermal cell ENCFF471YCZ 153 bp overlap
Creb5 1 dataset
Motif DE_72h DE_72h-Creb5_MA0840.2 10 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DBP 1 dataset
Motif DE_72h DE_72h-DBP_MA0639.2 10 bp overlap
DUXA 2 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 317 bp overlap
FOS::JUN 1 dataset
Motif DE_72h DE_72h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 617 bp overlap
ChIP DE DE-FOXA2-2 617 bp overlap
FOXB1 2 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 187 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 264 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 437 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 617 bp overlap
ChIP DE DE-GATA4-2 617 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 293 bp overlap
ChIP foregut GSE117136.GATA4.foregut 504 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 579 bp overlap
ChIP DE DE-GATA6-2 617 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 583 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 475 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 493 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 568 bp overlap
ChIP foregut GSE117136.GATA6.foregut 461 bp overlap
GLI3 1 dataset
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gli1 2 datasets
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_48h DE_48h-Gli2_MA0734.4 9 bp overlap
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HLF 1 dataset
Motif DE_72h DE_72h-HLF_MA0043.4 9 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 388 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
ChIP K562 ENCFF317JJX 371 bp overlap
HOXD12::ELK1 4 datasets
Motif DE_36h DE_36h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_48h DE_48h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_72h DE_72h-HOXD12ELK1_MA1958.2 13 bp overlap
ISL2 4 datasets
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0656.2 10 bp overlap
JUN 1 dataset
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
LIN54 2 datasets
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 4 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 264 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 307 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 246 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 261 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 191 bp overlap
NFIL3 1 dataset
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 152 bp overlap
Nr5A2 2 datasets
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PHOX2A 2 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 392 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF262YXJ 351 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 277 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 398 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 362 bp overlap
RBM22 3 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 617 bp overlap
ChIP K562 ENCFF420JDS 537 bp overlap
ChIP K562 ENCFF420JDS 255 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 359 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 573 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 461 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 379 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 437 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 453 bp overlap
SOX2 1 dataset
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 327 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 173 bp overlap
TEF 1 dataset
Motif DE_72h DE_72h-TEF_MA0843.2 10 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 216 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 135 bp overlap
ZNF675 1 dataset
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
Zfp809 3 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap