chr6 : 130,252,449 – 130,252,847
398 bp 68 TFs 0 linked genes
This 398 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:130,247,449 – 130,257,847
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCL6 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 107 bp overlap
BHLHE22 3 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD4 4 datasets
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 302 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 251 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 212 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 360 bp overlap
Bhlha15 1 dataset
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 249 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 398 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 363 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 398 bp overlap
CTCF 1 dataset
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 149 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 201 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 322 bp overlap
ChIP BLaER1 ENCFF274GAT 335 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
EP300 1 dataset
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 183 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 398 bp overlap
ChIP DE DE-FOXA2-2 341 bp overlap
ChIP colorectal-cancer_type-C GSE106921.FOXA2.colorectal-cancer_type-C 329 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 373 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 362 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 223 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 321 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 372 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 233 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 371 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 398 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 249 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 398 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 398 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 147 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
MYOD1 7 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 185 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 360 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 267 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 176 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 300 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 157 bp overlap
MYOG 6 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 282 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 254 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 260 bp overlap
NANOG 3 datasets
ChIP WA09 GSE105028.NANOG.WA09 204 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 298 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Neurod2 3 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Olig2 3 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 266 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 193 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 398 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
Ptf1A 4 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 333 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 336 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 221 bp overlap
ChIP Kasumi-1_shControl-AE GSE115115.RUNX1T1.Kasumi-1_shControl-AE 231 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMARCA4 2 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 86 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 125 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 269 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 180 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 182 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 3 datasets
ChIP RH4 GSE116344.SOX8.RH4 339 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 398 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 252 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 51 bp overlap
TAL1::TCF3 2 datasets
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 98 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 156 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 398 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 398 bp overlap
TEAD1 1 dataset
ChIP CCLP1 GSE62272.TEAD1.CCLP1 85 bp overlap
TFAP4 4 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
ChIP DLD-1 GSE46935.TFAP4.DLD-1 363 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 191 bp overlap
Tcf12 3 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 3 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 190 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Huangfu Lab · Publications · Resources · Contact