chr6 : 89,690,973 89,691,254
281 bp 57 TFs 0 linked genes
This 281 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:89,685,973 – 89,696,254
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 187 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 89 bp overlap
BRD4 3 datasets
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 149 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 91 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 281 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDK9 2 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 190 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 211 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 176 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 152 bp overlap
ETS1 3 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 197 bp overlap
ChIP GM23338 ENCFF701IZH 281 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 148 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 226 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 236 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 109 bp overlap
HIF1A 1 dataset
ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 186 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 281 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE79899.KMT2A.MV4-11 91 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 98 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 176 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 222 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 115 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 281 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 244 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 121 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 281 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 281 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 281 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 251 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 281 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 242 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 174 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 234 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 218 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 193 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 281 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 267 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 268 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 200 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 159 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 205 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 168 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 208 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 187 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 281 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 138 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 243 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 177 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 131 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 170 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 234 bp overlap
TBXT 1 dataset
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 139 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 226 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 281 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 281 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 208 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC5 1 dataset
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 219 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 281 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 185 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap