chr6 : 38,433,142 38,434,636
1,494 bp 76 TFs 2 linked genes
This 1.5 kb open chromatin element is linked to BTBD9 and GLO1 and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
BTBD9 205.6 kb Distal Multiome
GLO1 268.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:38,428,142 – 38,439,636
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
BACH1 2 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
BCL6B 1 dataset
Motif DE_24h DE_24h-BCL6B_MA0731.1 17 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 63 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 162 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 388 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 120 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif DE_24h DE_24h-ESRRA_MA0592.4 9 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Esrrg 2 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
FOSL1::JUN 2 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 2 datasets
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUNB_MA1137.2 9 bp overlap
FOXA1 1 dataset
Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 286 bp overlap
ChIP DE DE-FOXA2-1 1008 bp overlap
ChIP DE DE-FOXA2-2 1015 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 327 bp overlap
ChIP DE DE-GATA4-1 650 bp overlap
ChIP DE DE-GATA4-2 439 bp overlap
ChIP DE DE-GATA4-2 829 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-1 452 bp overlap
ChIP DE DE-GATA6-2 565 bp overlap
ChIP DE DE-GATA6-2 618 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 689 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 581 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 506 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 585 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 929 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 333 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 639 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
Hnf1A 4 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 11 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 396 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 528 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 395 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 382 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 611 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 639 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 687 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 295 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 403 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 489 bp overlap
LIN54 1 dataset
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
Mecom 1 dataset
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 6 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 301 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 985 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 239 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 575 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 217 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 644 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F2 2 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif DE_24h DE_24h-NR2F2_MA1111.2 7 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 3 datasets
Motif DE_24h DE_24h-ONECUT1_MA0679.3 9 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 307 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 1225 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 226 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 565 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 238 bp overlap
Ppara 2 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif DE_24h DE_24h-Ppara_MA2338.1 7 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
Prdm15 1 dataset
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
RORB 1 dataset
Motif DE_24h DE_24h-RORB_MA1150.2 10 bp overlap
SIX1 1 dataset
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 434 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 267 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 980 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 1447 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1458 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1484 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 478 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 768 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 373 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 882 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 909 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 399 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
TCF7L1 4 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
ZSCAN16 2 datasets
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap