chr5 : 174,733,156 174,733,366
210 bp 52 TFs 1 linked gene
This 210 bp open chromatin element is linked to MSX2 and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MSX2 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:174,728,156 – 174,738,366
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 210 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 210 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 141 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 106 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 210 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 210 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 202 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 88 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 113 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 184 bp overlap
ChIP H1 ENCFF329MAX 170 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 210 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 210 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 199 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 210 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 199 bp overlap
ESR1 2 datasets
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 112 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 210 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 210 bp overlap
EZH2 7 datasets
ChIP GM23338 ENCFF613YON 210 bp overlap
ChIP H1 ENCFF232NZA 210 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 200 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 114 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 178 bp overlap
ChIP neural progenitor cell ENCFF018MKA 210 bp overlap
ChIP neural progenitor cell ENCFF472NFV 210 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 210 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 210 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 210 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 210 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 91 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 210 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 101 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 208 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 53 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 210 bp overlap
NCOA3 1 dataset
ChIP NCI-H3396_E2 GSE32349.NCOA3.NCI-H3396_E2 191 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 161 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 146 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 113 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 104 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 210 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 210 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 210 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 182 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 187 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 135 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 210 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 83 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 210 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 210 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 127 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 94 bp overlap
ChIP H1 ENCFF239FFS 210 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 182 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 210 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 80 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 189 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 140 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 210 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 210 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 210 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 97 bp overlap
ChIP H1 ENCFF881NFR 210 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 71 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 178 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 88 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 66 bp overlap
ChIP NT2/D1 ENCFF574SXS 210 bp overlap
ChIP NT2/D1 ENCFF574SXS 166 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 210 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 163 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 205 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 157 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 159 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCFF096ELQ 96 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 210 bp overlap