chr5 : 141,491,416 141,491,797
381 bp 61 TFs 2 linked genes
This 381 bp open chromatin element is linked to PCDHGC5 and PCDHGC4 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PCDHGC5 2.3 kb Proximal Proximity
PCDHGC4 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,486,416 – 141,496,797
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 129 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 373 bp overlap
BCL11A 1 dataset
ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 292 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 246 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 238 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 232 bp overlap
BRD4 7 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 200 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 208 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 270 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 362 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 217 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 381 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 229 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 226 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 128 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 148 bp overlap
ChIP H1 ENCFF955PMP 310 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 227 bp overlap
CTCF 31 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 221 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 231 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 212 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 205 bp overlap
ChIP GM06990 ENCFF471OQT 199 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 140 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 185 bp overlap
ChIP GM12865 ENCFF067GFI 151 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 173 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 118 bp overlap
ChIP GM23338 ENCFF531QOI 278 bp overlap
ChIP GM23338 ENCFF772DML 190 bp overlap
ChIP H1 ENCFF414GZI 192 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 122 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 281 bp overlap
ChIP SEM GSE117864.CTCF.SEM 126 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 257 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 71 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 155 bp overlap
ChIP endodermal cell ENCFF471YCZ 198 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 151 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 122 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 113 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 127 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 230 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 177 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 236 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 206 bp overlap
ChIP leukemia_DMSO-24h GSE142161.CTCF.leukemia_DMSO-24h 180 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 204 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 217 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 248 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 168 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 268 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 97 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 186 bp overlap
ChIP SEM GSE117864.ERG.SEM 293 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 161 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 271 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 169 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 300 bp overlap
EZH2 9 datasets
ChIP GM23338 ENCFF613YON 147 bp overlap
ChIP GM23338 ENCFF886DXX 191 bp overlap
ChIP H1 ENCFF232NZA 381 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 190 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 172 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 328 bp overlap
ChIP hepatocyte ENCFF118DKH 121 bp overlap
ChIP neural progenitor cell ENCFF018MKA 275 bp overlap
ChIP neural progenitor cell ENCFF472NFV 381 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 127 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 121 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 294 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 285 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 148 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 132 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 124 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 202 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 200 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 324 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 127 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 195 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 96 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 160 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 211 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 232 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 78 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 381 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 217 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 315 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 328 bp overlap
PAX5 4 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 150 bp overlap
ChIP GM12892 ENCFF635MSF 75 bp overlap
ChIP GM12892 ENCFF635MSF 229 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 162 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 381 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 324 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 208 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 375 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 166 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 217 bp overlap
ChIP H1 ENCFF967OJF 168 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 194 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 194 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 214 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 215 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 381 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 282 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 260 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 368 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 209 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 148 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 277 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 319 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 157 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 130 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 247 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 258 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 213 bp overlap
SUZ12 3 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 147 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 239 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 128 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 127 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 190 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 130 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 185 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 235 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 219 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BKU.YY1.K-562 118 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 341 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 367 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 359 bp overlap