chr5 : 93,593,487 93,594,028
541 bp 57 TFs 1 linked gene
This 541 bp open chromatin element is linked to NR2F1 and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NR2F1 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:93,588,487 – 93,599,028
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 398 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 293 bp overlap
ChIP HepG2 ENCFF773YDL 295 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 310 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 204 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 408 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 541 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 541 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 541 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 541 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 529 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 541 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 280 bp overlap
BRD4 5 datasets
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 541 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 511 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 458 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 341 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 255 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 315 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 431 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 141 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 131 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 524 bp overlap
ChIP H1 ENCFF329MAX 324 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 431 bp overlap
CTCF 14 datasets
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 139 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 203 bp overlap
ChIP chondrocyte ENCFF134ORZ 161 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 199 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 152 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 167 bp overlap
ChIP endodermal cell ENCFF471YCZ 307 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 180 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 134 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 201 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 119 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 129 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 215 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 219 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 541 bp overlap
ChIP GM23338 ENCFF886DXX 477 bp overlap
ChIP H1 ENCFF232NZA 541 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 322 bp overlap
ChIP hESC GSE113817.EZH2.hESC 387 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 441 bp overlap
ChIP neural progenitor cell ENCFF018MKA 541 bp overlap
ChIP neural progenitor cell ENCFF472NFV 541 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 120 bp overlap
JARID2 6 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 541 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 541 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 541 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 541 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 541 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 541 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 153 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 541 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 180 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 253 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 541 bp overlap
NCAPH2 4 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 501 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 473 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 541 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 541 bp overlap
NR2F1 1 dataset
ChIP neuron-progenitor GSE132965.NR2F1.neuron-progenitor 479 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 154 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 334 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 541 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 481 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 541 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 541 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 496 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 304 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 272 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 182 bp overlap
RBM39 2 datasets
ChIP HepG2 ENCFF084YZE 517 bp overlap
ChIP HepG2 ENCFF801JUH 515 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 541 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 196 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 205 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 541 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 156 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 120 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 97 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 361 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 478 bp overlap
SMARCA4 12 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 183 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 148 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 541 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 541 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 512 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 452 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 202 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 154 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 343 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 202 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 94 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 281 bp overlap
SMARCC1 8 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 214 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 444 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 356 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 230 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 182 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 350 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 211 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 216 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 156 bp overlap
SS18 6 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 217 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 488 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 337 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 541 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 541 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 349 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 541 bp overlap
SUZ12 10 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 541 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 181 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 308 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 541 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 311 bp overlap
ChIP NT2/D1 ENCFF574SXS 340 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 541 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 541 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 297 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 153 bp overlap
TP63 2 datasets
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 143 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 389 bp overlap
UBTF 1 dataset
ChIP hESC GSE76586.UBTF.hESC 222 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 541 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 453 bp overlap
ZNF202 2 datasets
ChIP HEK293 ENCFF574FZA 341 bp overlap
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 499 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 218 bp overlap