chr5 : 53,434,186 – 53,435,233
1,047 bp 83 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 83 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:53,429,186 – 53,440,233
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 384 bp overlap
ATF2 3 datasets
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 358 bp overlap
Arid3a 2 datasets
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Atf3 3 datasets
Motif DE_48h DE_48h-Atf3_MA1988.2 7 bp overlap
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 3 datasets
Motif DE_48h DE_48h-BACH1_MA1633.2 9 bp overlap
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BACH2 6 datasets
Motif DE_48h DE_48h-BACH2_MA1101.3 11 bp overlap
Motif DE_48h DE_48h-BACH2_MA1470.2 19 bp overlap
Motif DE_60h DE_60h-BACH2_MA1101.3 11 bp overlap
Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap
Motif DE_72h DE_72h-BACH2_MA1101.3 11 bp overlap
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
BATF 3 datasets
Motif DE_48h DE_48h-BATF_MA1634.2 7 bp overlap
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 3 datasets
Motif DE_48h DE_48h-BATF3_MA0835.3 7 bp overlap
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 3 datasets
Motif DE_48h DE_48h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_72h DE_72h-BATFJUN_MA0462.3 7 bp overlap
BNC2 5 datasets
Motif DE_48h DE_48h-BNC2_MA1928.2 7 bp overlap
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 68 bp overlap
CREBBP 1 dataset
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 163 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 103 bp overlap
ChIP BLaER1 ENCFF262VBH 52 bp overlap
Dux 2 datasets
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 207 bp overlap
ESR1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 289 bp overlap
FOS 5 datasets
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 127 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 162 bp overlap
FOS::JUN 3 datasets
Motif DE_48h DE_48h-FOSJUN_MA0099.4 9 bp overlap
Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap
Motif DE_72h DE_72h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUNB 3 datasets
Motif DE_48h DE_48h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 3 datasets
Motif DE_48h DE_48h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 3 datasets
Motif DE_48h DE_48h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_72h DE_72h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 3 datasets
Motif DE_48h DE_48h-FOSL1_MA0477.3 9 bp overlap
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
Motif DE_72h DE_72h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 3 datasets
Motif DE_48h DE_48h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 3 datasets
Motif DE_48h DE_48h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 3 datasets
Motif DE_48h DE_48h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_72h DE_72h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 5 datasets
Motif DE_48h DE_48h-FOSL2_MA0478.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
ChIP SK-N-SH ENCFF127ZDW 285 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 154 bp overlap
FOSL2::JUN 3 datasets
Motif DE_48h DE_48h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_48h DE_48h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 3 datasets
Motif DE_48h DE_48h-FOSL2JUND_MA1144.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 308 bp overlap
ChIP DE DE-FOXA2-1 693 bp overlap
ChIP DE DE-FOXA2-2 859 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 457 bp overlap
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 263 bp overlap
FOXN3 2 datasets
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 6 datasets
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 207 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 378 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 221 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 341 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 220 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 394 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 204 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 151 bp overlap
ChIP SK-N-SH ENCFF040SSB 325 bp overlap
GATA4 11 datasets
ChIP A-549 GSE85002.GATA4.A-549 231 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 269 bp overlap
ChIP DE DE-GATA4-1 857 bp overlap
ChIP DE DE-GATA4-2 939 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 462 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 297 bp overlap
ChIP foregut GSE117136.GATA4.foregut 777 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 431 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 290 bp overlap
ChIP AGS GSE51936.GATA6.AGS 125 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 234 bp overlap
ChIP DE DE-GATA6-1 807 bp overlap
ChIP DE DE-GATA6-2 911 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 575 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 804 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 577 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 892 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 812 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 604 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 265 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 786 bp overlap
ChIP foregut GSE117136.GATA6.foregut 542 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 295 bp overlap
GFI1B 1 dataset
ChIP dermal-fibroblast GSE51025.GFI1B.dermal-fibroblast 147 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JDP2 3 datasets
Motif DE_48h DE_48h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 347 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 434 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 391 bp overlap
JUN::JUNB 3 datasets
Motif DE_48h DE_48h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 3 datasets
Motif DE_48h DE_48h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
Motif DE_72h DE_72h-JUNB_MA0490.3 9 bp overlap
JUND 6 datasets
Motif DE_48h DE_48h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
ChIP SK-N-SH ENCFF551NEQ 321 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 213 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 217 bp overlap
Jun 3 datasets
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
Lhx3 2 datasets
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 89 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 171 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 190 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 363 bp overlap
Mecom 2 datasets
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NFE2 3 datasets
Motif DE_48h DE_48h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 312 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 361 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 179 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 51 bp overlap
NUTM1 2 datasets
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 158 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 221 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
POU2F3 3 datasets
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU5F1 3 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
Prdm15 3 datasets
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
Motif DE_72h DE_72h-Prdm15_MA1616.2 11 bp overlap
RUNX3 3 datasets
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 298 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 617 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 371 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 331 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 454 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 379 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 244 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 161 bp overlap
SMARCA4 4 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 568 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 603 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 379 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 451 bp overlap
SMARCB1 4 datasets
ChIP TTC-1240 GSE124903.SMARCB1.TTC-1240 340 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 179 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 322 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCB1.TTC-1240_delC 300 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 500 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 461 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 330 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 392 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 210 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 923 bp overlap
SPI1 4 datasets
ChIP GM12878 ENCFF134LCP 289 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 163 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 216 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 158 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 240 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZKSCAN1 1 dataset
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 123 bp overlap
ZNF652 3 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF664 1 dataset
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 232 bp overlap
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