chr5 : 40,866,434 40,867,230
796 bp 77 TFs 0 linked genes
This 796 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:40,861,434 – 40,872,230
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP K-562_IBET151_50nM GSE120715.BRD3.K-562_IBET151_50nM 134 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 324 bp overlap
CBX3 1 dataset
ChIP T-47D-MTVL_BPTF GSE64467.CBX3.T-47D-MTVL_BPTF 152 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 153 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 202 bp overlap
DMRTA1 1 dataset
Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 158 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 158 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 274 bp overlap
ETV3 1 dataset
Motif DE_60h DE_60h-ETV3_MA0763.2 9 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 96 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 190 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 205 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 525 bp overlap
ChIP DE DE-GATA4-2 729 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 298 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 197 bp overlap
ChIP DE DE-GATA6-1 582 bp overlap
ChIP DE DE-GATA6-2 739 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 544 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 523 bp overlap
ChIP foregut GSE117136.GATA6.foregut 345 bp overlap
GTF2B 1 dataset
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 173 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HIC2 1 dataset
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
HSF2 1 dataset
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-HUSH-KO GSE95451.MORC2.HeLa_V5-HUSH-KO 208 bp overlap
Nfe2l2 1 dataset
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
OSR2 1 dataset
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 677 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 174 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 215 bp overlap
SOX13 1 dataset
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 327 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 655 bp overlap
SOX2 1 dataset
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
STAT1 1 dataset
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
STAT3 3 datasets
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 147 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_60h DE_60h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0815.1 13 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Thap11 1 dataset
Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap
ZBTB24 1 dataset
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7B 1 dataset
Motif DE_60h DE_60h-ZBTB7B_MA0694.2 10 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 151 bp overlap
ZNF416 1 dataset
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
ZNF418 1 dataset
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF707 1 dataset
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF716 1 dataset
ChIP HEK293T GSE78099.ZNF716.HEK293T 120 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Znf423 2 datasets
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap