chr4 : 116,231,989 116,232,352
363 bp 62 TFs 0 linked genes
This 363 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:116,226,989 – 116,237,352
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
CTCF 107 datasets
ChIP 22Rv1 ENCFF466OXN 363 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 186 bp overlap
ChIP BE2C ENCFF757SRF 278 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 194 bp overlap
ChIP C4-2B ENCFF821XVN 363 bp overlap
ChIP C4-2B ENCFF821XVN 338 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 150 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 332 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 199 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 174 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 166 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 224 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 183 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 177 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 207 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 209 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 164 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 249 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 230 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 150 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 132 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 214 bp overlap
ChIP HCT116 ENCFF003KHP 351 bp overlap
ChIP HCT116 ENCFF209YMI 256 bp overlap
ChIP HCT116 ENCFF373YMA 265 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 164 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 150 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 146 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 117 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 120 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 119 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 167 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 200 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 163 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 156 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 240 bp overlap
ChIP MCF-7 ENCFF139NQI 244 bp overlap
ChIP MCF-7 ENCFF162GNE 244 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 200 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 181 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 150 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 176 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 152 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 209 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 179 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 224 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 224 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 190 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 228 bp overlap
ChIP RWPE2 ENCFF911IEE 363 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 155 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 106 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 98 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 194 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 173 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 196 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 190 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 185 bp overlap
ChIP VCaP ENCFF858YQT 249 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 245 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 139 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 163 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 112 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 180 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 161 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 104 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 218 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 136 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 136 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 186 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 344 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 153 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 185 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 139 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 163 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 145 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 169 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 185 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 213 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 209 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 128 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 176 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 219 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 131 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 209 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 199 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 177 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 177 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 176 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 147 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
GRHL2 2 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 156 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 219 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 339 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 277 bp overlap
MAFK 4 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 199 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 206 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
RAD21 18 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 176 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 216 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 191 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 193 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 135 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 128 bp overlap
ChIP K562 ENCFF634XYR 296 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 173 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 163 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 147 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 194 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 125 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 162 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 178 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 244 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 221 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 232 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 192 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 203 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 167 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 116 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 173 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 149 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 219 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 171 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 148 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 227 bp overlap