chr4 : 115,110,111 – 115,110,693
582 bp 59 TFs 1 linked gene
This 582 bp open chromatin element is linked to NDST4 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NDST4 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:115,105,111 – 115,115,693
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 15 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 307 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 308 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 298 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 368 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 320 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 237 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 128 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 242 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 295 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 332 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 277 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 173 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 202 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 378 bp overlap
ARID1A 2 datasets
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 215 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 210 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 111 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 291 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 353 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 288 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 285 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 377 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 154 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 289 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 165 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 382 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 469 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 558 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 225 bp overlap
FOXA1 28 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 303 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 322 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 197 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 317 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 256 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 240 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 296 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 200 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 272 bp overlap
ChIP A1A3_Dex GSE112491.FOXA1.A1A3_Dex 148 bp overlap
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 206 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 389 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 227 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 191 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 156 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 383 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 251 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 287 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 291 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 212 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 267 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 259 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 159 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 264 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 194 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 316 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 182 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 582 bp overlap
ChIP DE DE-FOXA2-2 582 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 260 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 292 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 292 bp overlap
GATA3 2 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 338 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 171 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 484 bp overlap
ChIP DE DE-GATA4-2 542 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 376 bp overlap
ChIP foregut GSE117136.GATA4.foregut 364 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 478 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 431 bp overlap
ChIP DE DE-GATA6-2 541 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 442 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 496 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 582 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 493 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 494 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 393 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 328 bp overlap
HOXB13 33 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 340 bp overlap
ChIP 22Rv1 GSE129951.HOXB13.22Rv1 318 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 381 bp overlap
ChIP LNCaP GSE96652.HOXB13.LNCaP 302 bp overlap
ChIP LNCaP_DHT_CTL GSE117304.HOXB13.LNCaP_DHT_CTL 263 bp overlap
ChIP LNCaP_EtOH_CTL GSE117304.HOXB13.LNCaP_EtOH_CTL 213 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 401 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 77 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 158 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 338 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 364 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 285 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 473 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 349 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 316 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 361 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 245 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 327 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 327 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 210 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 166 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 357 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 421 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 294 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 385 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 235 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 433 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 374 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 332 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 463 bp overlap
ChIP prostate_P5 GSE130408.HOXB13.prostate_P5 169 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 387 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 365 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 189 bp overlap
MEIS1 1 dataset
ChIP 22Rv1 GSE132716.MEIS1.22Rv1 346 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 331 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 174 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 280 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 187 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 397 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 327 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 385 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 209 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 407 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 547 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 383 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 258 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 166 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 582 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 488 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 471 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 483 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 330 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 582 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 540 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 215 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 121 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 539 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 197 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 253 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 342 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 323 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 307 bp overlap
TLE3 3 datasets
ChIP 22Rv1 GSE123618.TLE3.22Rv1 300 bp overlap
ChIP LNCaP GSE94682.TLE3.LNCaP 325 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 272 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 259 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 371 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 192 bp overlap
ZBTB6 2 datasets
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZFP42 1 dataset
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 208 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 273 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 211 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 311 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 351 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 252 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 329 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 257 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 308 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 348 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 428 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 285 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 175 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 525 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 422 bp overlap
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