chr4 : 3,807,895 – 3,808,372
477 bp 54 TFs 4 linked genes
This 477 bp open chromatin element is linked to 4 target genes and is bound by 54 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ADRA2C 41.7 kb Distal Multiome
FAM86EP 147.4 kb Distal Multiome
LRPAP1 275.6 kb Distal Multiome
ENSG00000290888 299.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:3,802,895 – 3,813,372
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 234 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 64 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 255 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 205 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 308 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 410 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 450 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 216 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 271 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 477 bp overlap
CTCF 1 dataset
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 457 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 190 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 299 bp overlap
EZH2 14 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 477 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 322 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 477 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 477 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 257 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 477 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 209 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 324 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 148 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 321 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 244 bp overlap
ChIP neural progenitor cell ENCFF472NFV 477 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 302 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 314 bp overlap
EZH2_phosphoT487 3 datasets
ChIP HCT-116 ENCSR429CLV.EZH2_phosphoT487.HCT-116 99 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 190 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 477 bp overlap
FLI1 4 datasets
ChIP A-673 GSE99959.FLI1.A-673 446 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 477 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 477 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 316 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 477 bp overlap
ChIP DE DE-FOXA2-2 477 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA2 2 datasets
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 363 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 251 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 477 bp overlap
ChIP DE DE-GATA4-2 477 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 277 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 439 bp overlap
ChIP DE DE-GATA6-2 477 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 477 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 453 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 415 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 455 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 477 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 477 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 477 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 352 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 438 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 477 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 231 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 342 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 289 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 214 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 477 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 477 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 242 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 477 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 347 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 342 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RARA::RXRA 1 dataset
Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 1 dataset
Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 216 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 359 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 142 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 477 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 477 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 356 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 335 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 422 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 477 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 203 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 427 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 369 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 356 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 381 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 206 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 380 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 183 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 157 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 228 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 318 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 267 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 185 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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