chr3 : 184,360,146 184,360,404
258 bp 52 TFs 2 linked genes
This 258 bp open chromatin element is linked to CLCN2 and POLR2H and is bound by 52 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CLCN2 1.2 kb Proximal Proximity
POLR2H 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:184,355,146 – 184,365,404
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 176 bp overlap
ARHGAP35 2 datasets
ChIP K-562 ENCSR571BUF.ARHGAP35.K-562 90 bp overlap
ChIP K562 ENCFF198TWI 163 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 209 bp overlap
ARID4B 1 dataset
ChIP K562 ENCFF791HBV 131 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 258 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 170 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 234 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 220 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 123 bp overlap
CTCF 1 dataset
ChIP testis ENCFF128XQJ 57 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 177 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 132 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 254 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 205 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 137 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 149 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 193 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 139 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 228 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 99 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 200 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 168 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 258 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 205 bp overlap
ChIP K562 ENCFF771OHZ 89 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 258 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 124 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 100 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 182 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 124 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 139 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 251 bp overlap
MTA2 3 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 192 bp overlap
ChIP K562 ENCFF441KCP 198 bp overlap
ChIP K562 ENCFF441KCP 258 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 192 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 125 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 132 bp overlap
POLR2A 1 dataset
ChIP body of pancreas ENCFF675RCN 258 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 218 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 85 bp overlap
RBM39 2 datasets
ChIP K-562 GSE120104.RBM39.K-562 125 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 156 bp overlap
RFX1 1 dataset
ChIP MCF-7 ENCFF973QAD 233 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 258 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 79 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 258 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 176 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 136 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 170 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 247 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 246 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 148 bp overlap
ChIP K562 ENCFF255RZG 210 bp overlap
ZNF184 2 datasets
ChIP K-562 ENCSR546IHU.ZNF184.K-562 101 bp overlap
ChIP K562 ENCFF579ZRD 186 bp overlap
ZNF257 3 datasets
ChIP HEK293T GSE78099.ZNF257.HEK293T 258 bp overlap
ChIP K-562 ENCSR492FKD.ZNF257.K-562 181 bp overlap
ChIP K562 ENCFF849YZP 183 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 68 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 221 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 206 bp overlap
ChIP K562 ENCFF601EMZ 258 bp overlap
ChIP WTC11 ENCFF086TTM 159 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 184 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 70 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 258 bp overlap