chr1 : 65,703,835 – 65,704,540
705 bp 67 TFs 1 linked gene
This 705 bp open chromatin element is linked to ENSG00000285079 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000285079 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:65,698,835 – 65,709,540
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
BHLHE22 2 datasets
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 400 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 202 bp overlap
BRD4 8 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 236 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 269 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 188 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 188 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 268 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 383 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 229 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 233 bp overlap
Bhlha15 1 dataset
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 305 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 238 bp overlap
CDK9 3 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 195 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 183 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 96 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 147 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 423 bp overlap
ChIP BLaER1 ENCFF346MCV 300 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 585 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 327 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 158 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 264 bp overlap
FOXP1 1 dataset
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 200 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 279 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 238 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 176 bp overlap
GATA3 1 dataset
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 181 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 279 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 575 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 518 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 705 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 600 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 555 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 705 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 667 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 297 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 89 bp overlap
IRF4 7 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 180 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 231 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 223 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 197 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 197 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 183 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 187 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 314 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 364 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 343 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 387 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 247 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 298 bp overlap
MED1 5 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 177 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 144 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 75 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 164 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 97 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 204 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 156 bp overlap
MSC 1 dataset
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 258 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 285 bp overlap
MYC 3 datasets
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 219 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 113 bp overlap
MYF5 1 dataset
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
Msgn1 1 dataset
Motif DE_36h DE_36h-Msgn1_MA1524.3 10 bp overlap
NEUROD1 1 dataset
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 320 bp overlap
Prdm4 1 dataset
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 233 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 264 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 217 bp overlap
RUNX1 4 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 182 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 167 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 200 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 125 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 523 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 677 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 638 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 629 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 661 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 522 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 705 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 514 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 153 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 218 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 433 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 431 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 13 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 203 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 264 bp overlap
ChIP GM12878 ENCFF134LCP 274 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 224 bp overlap
ChIP HL-60 ENCFF645GBT 263 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 247 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 145 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 258 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 187 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 185 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 132 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 97 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 213 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 289 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 279 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 332 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 334 bp overlap
TAL1::TCF3 1 dataset
Motif DE_36h DE_36h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 123 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 187 bp overlap
TCF4 3 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 468 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 511 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 94 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 245 bp overlap
TFAP4 1 dataset
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_36h DE_36h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 208 bp overlap
YY1 1 dataset
ChIP AB-LCL GSE98477.YY1.AB-LCL 323 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 341 bp overlap
ZIC5 1 dataset
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 195 bp overlap
ZNF528 1 dataset
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
Zic1::Zic2 1 dataset
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Huangfu Lab · Publications · Resources · Contact