chr3 : 127,536,882 – 127,537,124
242 bp 54 TFs 1 linked gene
This 242 bp open chromatin element is linked to LINC01471 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01471 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:127,531,882 – 127,542,124
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 208 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 147 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 67 bp overlap
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 69 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 242 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 242 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 242 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 242 bp overlap
BRD4 12 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 204 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 164 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 218 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 242 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 242 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 127 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 242 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 197 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 242 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 242 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 242 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 89 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 159 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 242 bp overlap
CTCF 1 dataset
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 141 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 109 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 68 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 144 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 242 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 242 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 118 bp overlap
EP300 3 datasets
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 127 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 242 bp overlap
ChIP neural cell ENCFF442QNK 218 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 79 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 242 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 53 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 234 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 242 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 242 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 242 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 148 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 242 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 242 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 164 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 87 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 242 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 242 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 173 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 242 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 242 bp overlap
ChIP neural cell ENCFF623HQN 242 bp overlap
ChIP neural cell ENCFF623HQN 158 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 164 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 157 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 102 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 53 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 242 bp overlap
NR3C1 2 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 242 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 87 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 54 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 107 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 171 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 193 bp overlap
ChIP neural cell ENCFF604SPB 231 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 242 bp overlap
ChIP neural cell ENCFF564MOT 224 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 133 bp overlap
RELA 1 dataset
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 78 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 215 bp overlap
ChIP neural cell ENCFF882LXX 242 bp overlap
RFX1 3 datasets
ChIP MCF-7 ENCFF782EZS 146 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 150 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 242 bp overlap
RUNX1 3 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 242 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 242 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 242 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 212 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 197 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 242 bp overlap
ChIP neural cell ENCFF795YGY 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 217 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 242 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 238 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 121 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 178 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 242 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 242 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 107 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 242 bp overlap
ChIP neural cell ENCFF468SPD 242 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 169 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 104 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 160 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 172 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 156 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 98 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 242 bp overlap
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