chr3 : 108,683,457 – 108,684,009
552 bp 78 TFs 0 linked genes
This 552 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:108,678,457 – 108,689,009
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
BACH2 2 datasets
Motif DE_36h DE_36h-BACH2_MA1470.2 19 bp overlap
Motif DE_48h DE_48h-BACH2_MA1470.2 19 bp overlap
BARX2 2 datasets
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 121 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
E2F6 2 datasets
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
EHF 2 datasets
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_36h DE_36h-ELK4_MA0076.3 9 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV2::HOXB13 1 dataset
Motif DE_36h DE_36h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV6 2 datasets
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
ETV7 2 datasets
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Ebf4 1 dataset
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
Elf5 2 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
GABPA 2 datasets
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 225 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 285 bp overlap
ChIP DE DE-GATA4-2 373 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 500 bp overlap
ChIP foregut GSE117136.GATA4.foregut 325 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 247 bp overlap
ChIP DE DE-GATA6-2 494 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 552 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 552 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 552 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 552 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 552 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 512 bp overlap
ChIP foregut GSE117136.GATA6.foregut 338 bp overlap
GFI1 2 datasets
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
GLIS2 1 dataset
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HNF1A 2 datasets
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_36h DE_36h-HNF1B_MA0153.2 13 bp overlap
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HOXA4 2 datasets
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
MPHOSPH8 1 dataset
ChIP H9 GSE95374.MPHOSPH8.H9 135 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Mecom 2 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NKX6-1 2 datasets
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 2 datasets
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Nfat5 1 dataset
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 263 bp overlap
POU1F1 3 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F2 4 datasets
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 3 datasets
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
POU5F1B 2 datasets
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 2 datasets
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 361 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 483 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SPI1 8 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 123 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 349 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 268 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 245 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 176 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 156 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 68 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 113 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat6 1 dataset
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 210 bp overlap
TBX19 1 dataset
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ZBTB11 2 datasets
Motif DE_36h DE_36h-ZBTB11_MA2329.1 9 bp overlap
Motif DE_36h DE_36h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF157 1 dataset
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
ZNF175 2 datasets
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 155 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
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