chr1 : 60,114,827 – 60,115,213

386 bp 95 TFs 1 linked gene

This 386 bp open chromatin element is linked to LINC02778 and is bound by 95 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC02778		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

95 transcription factors

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCL11A 1 dataset

ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 89 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 246 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CTCF 22 datasets

ChIP GM23338 ENCFF772DML 175 bp overlap

ChIP H1 ENCFF764RHO 200 bp overlap

ChIP H9 ENCFF152GTF 343 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 186 bp overlap

ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap

ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 152 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 165 bp overlap

ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 172 bp overlap

ChIP RH4 GSE83726.CTCF.RH4 197 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 253 bp overlap

ChIP brain ENCFF685VRG 386 bp overlap

ChIP endodermal cell ENCFF471YCZ 374 bp overlap

ChIP epithelial cell of proximal tubule ENCFF763ZKS 246 bp overlap

ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 191 bp overlap

ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 147 bp overlap

ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 143 bp overlap

ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap

ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 143 bp overlap

ChIP leukemia GSE142161.CTCF.leukemia 254 bp overlap

ChIP neural progenitor cell ENCFF420RBO 147 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 256 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 155 bp overlap

CTCFL 1 dataset

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

Crx 1 dataset

Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 209 bp overlap

ChIP neural cell ENCFF442QNK 298 bp overlap

ERF::FOXI1 1 dataset

Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif ES_0h ES_0h-ERFFOXO1_MA1936.2 12 bp overlap

ETV5::FOXO1 1 dataset

Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap

EWSR1-FLI1 1 dataset

Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap

Elf5 1 dataset

Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap

FLI1::FOXI1 1 dataset

Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXH1 1 dataset

Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap

FOXO1::ELK1 1 dataset

Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GSC 1 dataset

Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap

HES6 1 dataset

Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA5 1 dataset

Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IKZF1 2 datasets

Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 350 bp overlap

IKZF2 1 dataset

Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 189 bp overlap

INSM1 1 dataset

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF16 1 dataset

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

KLF5 2 datasets

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 227 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MAFB 1 dataset

ChIP islet ERP004003.MAFB.islet 190 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 266 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 190 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 194 bp overlap

Nfat5 1 dataset

Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

OTX1 1 dataset

Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 185 bp overlap

PAX9 1 dataset

Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap

PBX1 1 dataset

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

PBX1-2-3 1 dataset

ChIP 697 GSE138031.PBX1-2-3.697 180 bp overlap

PITX1 1 dataset

Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif ES_0h ES_0h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap

POLR2A 3 datasets

ChIP PFSK-1 ENCFF576NIT 384 bp overlap

ChIP PFSK-1 ENCFF576NIT 184 bp overlap

ChIP neural cell ENCFF604SPB 158 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 144 bp overlap

Pparg::Rxra 1 dataset

Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 244 bp overlap

RHOXF1 1 dataset

Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap

SIN3A 2 datasets

ChIP PFSK-1 ENCFF218MAY 232 bp overlap

ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 346 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 230 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 277 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 219 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 211 bp overlap

SOX8 1 dataset

ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap

SP3 1 dataset

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

SP4 1 dataset

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

SPIB 1 dataset

Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap

SPIC 1 dataset

Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap

SS18 1 dataset

ChIP SYO-1 GSE108025.SS18.SYO-1 259 bp overlap

Spi1 1 dataset

Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap

Stat2 1 dataset

Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap

TCF3-PBX1 1 dataset

ChIP 697_HF GSE138031.TCF3-PBX1.697_HF 202 bp overlap

TCF7L2 1 dataset

ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 216 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

UBN1 1 dataset

ChIP HeLa GSE45024.UBN1.HeLa 99 bp overlap

ZFP14 1 dataset

Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap

ZNF257 1 dataset

ChIP HEK293T GSE78099.ZNF257.HEK293T 265 bp overlap

ZNF354C 1 dataset

Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap

ZNF675 1 dataset

Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap