chr1 : 56,567,066 56,567,254
188 bp 60 TFs 0 linked genes
This 188 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:56,562,066 – 56,572,254
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 103 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 68 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF207QHL 188 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 188 bp overlap
Atf1 1 dataset
Motif ES_0h ES_0h-Atf1_MA0604.1 8 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 136 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 188 bp overlap
ChIP hESC GSE33281.BRD4.hESC 77 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 164 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 188 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 188 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 188 bp overlap
ChIP H1 ENCFF955PMP 188 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 182 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 132 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 137 bp overlap
ESR1 16 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 188 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 179 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 108 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 188 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 188 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 110 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 188 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 188 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 188 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 188 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 188 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 188 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 187 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 188 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 122 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 132 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 188 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 188 bp overlap
ChIP GM12878 ENCFF824TGK 188 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 188 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 188 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 188 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 175 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 188 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 101 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 188 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 188 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 188 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 188 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 149 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 188 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 188 bp overlap
ChIP hESC GSE18292.NANOG.hESC 88 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 145 bp overlap
NIPBL 1 dataset
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 182 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 71 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
ONECUT1 5 datasets
ChIP H9 ERP004206.ONECUT1.H9 188 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF243FIR 138 bp overlap
ChIP liver ERP002306.ONECUT1.liver 145 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 188 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 188 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 188 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 161 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 188 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 188 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 188 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 120 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 188 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 188 bp overlap
SMARCA4 5 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 188 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 188 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 152 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 167 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 188 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 188 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 188 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 188 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 85 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 188 bp overlap
ChIP NPC GSE122631.SOX2.NPC 179 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 188 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 188 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 188 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 178 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 147 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 188 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 188 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap