chr3 : 34,213,596 34,213,859
263 bp 54 TFs 0 linked genes
This 263 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:34,208,596 – 34,218,859
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 112 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 110 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 145 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 104 bp overlap
BRD4 2 datasets
ChIP HEK293T GSE51633.BRD4.HEK293T 83 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 193 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 103 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 152 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 119 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 257 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 214 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 248 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 263 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 263 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 132 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 101 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 219 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 263 bp overlap
ChIP DE DE-GATA4-2 263 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 263 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 263 bp overlap
ChIP DE DE-GATA6-2 263 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 263 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 263 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 255 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 193 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 263 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 263 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 208 bp overlap
MAFK 1 dataset
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 56 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 182 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 152 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 108 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 61 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 163 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 55 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 205 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 156 bp overlap
OSR1 1 dataset
Motif DE_36h DE_36h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 263 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 169 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 197 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 263 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 256 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 146 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 263 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 263 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 193 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 263 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 145 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 204 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 252 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 161 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 259 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 192 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 235 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 181 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 227 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 216 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 263 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 191 bp overlap
ZNF708 1 dataset
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap