chr3 : 27,213,519 27,213,811
292 bp 48 TFs 0 linked genes
This 292 bp open chromatin element has no linked target genes and is bound by 48 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,208,519 – 27,218,811
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 144 bp overlap
ChIP H1 ENCFF399KAM 292 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 292 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 292 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 171 bp overlap
BACH2 2 datasets
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
Motif ES_0h ES_0h-BACH2_MA1101.3 11 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 189 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 292 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 124 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 282 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 196 bp overlap
GRHL2 5 datasets
ChIP HBE GSE46194.GRHL2.HBE 169 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 157 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 213 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 160 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 111 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 143 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 284 bp overlap
ChIP H1 ENCFF747ZPQ 228 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 292 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 292 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 192 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 211 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 190 bp overlap
ChIP hESC GSE18292.NANOG.hESC 115 bp overlap
NFE2 2 datasets
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 236 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU5F1 5 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 292 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 224 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 193 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 134 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 292 bp overlap
ChIP H1 ENCFF905HFL 205 bp overlap
RELA 2 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 186 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 219 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 267 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 229 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 183 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 238 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 75 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 285 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TFCP2 2 datasets
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap