chr1 : 53,189,071 – 53,189,387
316 bp 56 TFs 1 linked gene
This 316 bp open chromatin element is linked to CPT2 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CPT2 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:53,184,071 – 53,194,387
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 290 bp overlap
ChIP K562 ENCFF938UXQ 212 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 247 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 260 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 286 bp overlap
ChIP K562 ENCFF963TXY 316 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 316 bp overlap
ChIP K562 ENCFF673OEZ 237 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 117 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 146 bp overlap
ChIP K562 ENCFF180STA 265 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 316 bp overlap
ChIP K562 ENCFF403WPG 316 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 71 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 316 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 199 bp overlap
ChIP K562 ENCFF739JDE 316 bp overlap
ChIP K562 ENCFF775HUO 316 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 240 bp overlap
ChIP K562 ENCFF622HMZ 316 bp overlap
EGR1 8 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 293 bp overlap
ChIP HepG2 ENCFF674RQO 316 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 316 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 316 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 236 bp overlap
ChIP K562 ENCFF006PJY 151 bp overlap
ChIP K562 ENCFF113OPQ 253 bp overlap
ChIP K562 ENCFF895KGN 249 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 164 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 57 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 259 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 187 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 167 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 115 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 167 bp overlap
ChIP DE DE-FOXA2-1 262 bp overlap
ChIP DE DE-FOXA2-2 290 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 174 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 168 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 152 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 263 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 179 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 183 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 151 bp overlap
ChIP K562 ENCFF094CMK 189 bp overlap
ChIP erythroblast ENCFF867JAR 316 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 305 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 199 bp overlap
ChIP K562 ENCFF544PCK 214 bp overlap
ChIP K562 ENCFF830LLA 316 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 228 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 182 bp overlap
ChIP DE DE-GATA4-1 316 bp overlap
ChIP DE DE-GATA4-2 316 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 243 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 316 bp overlap
ChIP DE DE-GATA6-2 316 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 316 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 316 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 315 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 273 bp overlap
ChIP K562 ENCFF968WBH 316 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 267 bp overlap
ChIP K-562 ENCSR000AQG.HDAC2.K-562 147 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 235 bp overlap
ChIP K562 ENCFF744ALD 316 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 268 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 313 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 184 bp overlap
ChIP K562 ENCFF830LVJ 211 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF133OLU 316 bp overlap
ChIP K562 ENCFF934ZRG 316 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 164 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 191 bp overlap
LEF1 2 datasets
ChIP K-562 ENCSR343ELW.LEF1.K-562 245 bp overlap
ChIP K562 ENCFF198WCP 312 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 111 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 255 bp overlap
ChIP K562 ENCFF788MPU 256 bp overlap
ChIP K562 ENCFF866HRM 306 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 204 bp overlap
NR2C2 1 dataset
ChIP K-562 ENCSR750LYM.NR2C2.K-562 207 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 169 bp overlap
ChIP K562 ENCFF004YPK 310 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 156 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 256 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 304 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 225 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 316 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 316 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 316 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 316 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 316 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 234 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 219 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 316 bp overlap
SMARCE1 3 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 316 bp overlap
ChIP K562 ENCFF690CFF 316 bp overlap
ChIP K562 ENCFF690CFF 248 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 170 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 246 bp overlap
ChIP K562 ENCFF059YCJ 316 bp overlap
SPI1 2 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 90 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 112 bp overlap
TAL1 8 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 229 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 163 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 233 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 186 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 215 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 175 bp overlap
ChIP K562 ENCFF620GMX 286 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 213 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 203 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 191 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 129 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 266 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 272 bp overlap
ZNF317 1 dataset
ChIP HepG2 ENCFF018ISP 129 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 265 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 316 bp overlap
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