chr2 : 231,337,851 231,338,311
460 bp 58 TFs 4 linked genes
This 460 bp open chromatin element is linked to 4 target genes and is bound by 58 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
B3GNT7 57.6 kb Distal Multiome
NCL 126.5 kb Distal Multiome
ARMC9 139.4 kb Distal Multiome
PSMD1 281.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:231,332,851 – 231,343,311
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap
BCL3 2 datasets
ChIP HepG2 ENCFF641LQV 355 bp overlap
ChIP HepG2 ENCFF641LQV 460 bp overlap
CEBPA 2 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 148 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 110 bp overlap
CEBPB 5 datasets
ChIP HepG2 ENCFF536NTI 158 bp overlap
ChIP Ishikawa ENCFF010USJ 166 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 145 bp overlap
ChIP MCF-7 ENCFF772ZTQ 183 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 208 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 137 bp overlap
ChIP BLaER1 ENCFF093OYK 230 bp overlap
ChIP BLaER1 ENCFF274GAT 150 bp overlap
ChIP BLaER1 ENCFF364PUR 236 bp overlap
ChIP BLaER1 ENCFF460KDD 186 bp overlap
E2F8 3 datasets
Motif DE_48h DE_48h-E2F8_MA0865.3 9 bp overlap
Motif DE_60h DE_60h-E2F8_MA0865.3 9 bp overlap
Motif DE_72h DE_72h-E2F8_MA0865.3 9 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 133 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 248 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 250 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 221 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 389 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 239 bp overlap
FEZF2 2 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 245 bp overlap
FOXA2 5 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 173 bp overlap
ChIP DE DE-FOXA2-1 354 bp overlap
ChIP DE DE-FOXA2-2 354 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 179 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 259 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 155 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 189 bp overlap
GATA2 1 dataset
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 172 bp overlap
GATA4 18 datasets
ChIP DE DE-GATA4-1 454 bp overlap
ChIP DE DE-GATA4-2 460 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 285 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 285 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 318 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 237 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 187 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 260 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 264 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 333 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 306 bp overlap
ChIP foregut GSE117136.GATA4.foregut 362 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 409 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 398 bp overlap
GATA5 4 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 20 datasets
ChIP AGS GSE51705.GATA6.AGS 262 bp overlap
ChIP AGS GSE51936.GATA6.AGS 151 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 258 bp overlap
ChIP DE DE-GATA6-1 367 bp overlap
ChIP DE DE-GATA6-2 460 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 427 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 460 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 460 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 460 bp overlap
ChIP H9 ERP004206.GATA6.H9 195 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 460 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 198 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 259 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 387 bp overlap
ChIP foregut GSE117136.GATA6.foregut 403 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 399 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 383 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 395 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 362 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 111 bp overlap
Hmga1 3 datasets
Motif DE_48h DE_48h-Hmga1_MA2124.1 8 bp overlap
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
Motif DE_72h DE_72h-Hmga1_MA2124.1 8 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 230 bp overlap
JUN 3 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 277 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 460 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 286 bp overlap
KDM1A 4 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 460 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 199 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 172 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 387 bp overlap
KLF1 3 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF2 3 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 330 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 211 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 242 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR000BRO.MYBL2.Hep-G2 162 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 288 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 157 bp overlap
PATZ1 4 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
ChIP HepG2 ENCFF723PFC 379 bp overlap
PBX1 3 datasets
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 285 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 460 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 371 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 367 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 252 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 460 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 294 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 312 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 302 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 282 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 209 bp overlap
TEAD1 4 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 181 bp overlap
TEAD4 2 datasets
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 214 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 108 bp overlap
TFAP2A 2 datasets
Motif DE_48h DE_48h-TFAP2A_MA0872.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 2 datasets
Motif DE_48h DE_48h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
THAP1 2 datasets
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
ZMYM2 1 dataset
ChIP HepG2 ENCFF575OMW 139 bp overlap
ZNF121 3 datasets
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF343YSL 258 bp overlap
ChIP WTC11 ENCFF291API 161 bp overlap
ZNF136 3 datasets
Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
Motif DE_72h DE_72h-ZNF136_MA1588.1 15 bp overlap
ZNF460 2 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF770 2 datasets
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 206 bp overlap
ChIP HepG2 ENCFF233UVH 257 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap