chr2 : 188,278,467 – 188,279,061

594 bp 57 TFs 1 linked gene

This 594 bp open chromatin element is linked to LINC01090 and is bound by 57 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01090		8.6 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

57 transcription factors

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 594 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 585 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 272 bp overlap

BRD4 3 datasets

ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 300 bp overlap

ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 420 bp overlap

ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 583 bp overlap

BRF1 1 dataset

ChIP H9 GSE94418.BRF1.H9 189 bp overlap

CHD1 2 datasets

ChIP WA01 ENCSR000AQK.CHD1.WA01 121 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 248 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 172 bp overlap

CTCF 3 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap

ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 267 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 187 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF460KDD 251 bp overlap

ChIP BLaER1 ENCFF460KDD 179 bp overlap

ESR1 2 datasets

Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 305 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 363 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 479 bp overlap

ChIP DE DE-FOXA2-2 313 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 171 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

HDAC2 1 dataset

ChIP H1 ENCFF939VKA 237 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap

KMT2A 1 dataset

ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 294 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 495 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 475 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 139 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 195 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

OSR1 1 dataset

Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 464 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 217 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 55 bp overlap

PPARD 1 dataset

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 363 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

SMARCA4 2 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 453 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 402 bp overlap

SMARCC1 4 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 339 bp overlap

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 519 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 190 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 380 bp overlap

SOX21 1 dataset

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

SOX8 1 dataset

ChIP RH4 GSE116344.SOX8.RH4 350 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Sox1 1 dataset

Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

TBP 2 datasets

ChIP hESC GSE122298.TBP.hESC 158 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 114 bp overlap

THRA 1 dataset

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 523 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 286 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF189 1 dataset

Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF263 1 dataset

ChIP WTC11 ENCFF893RTM 385 bp overlap

ZNF317 1 dataset

Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap

ZNF341 1 dataset

Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 183 bp overlap

ZNF528 2 datasets

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 165 bp overlap

ZNF708 1 dataset

Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap

ZSCAN31 1 dataset

Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap