chr2 : 175,441,127 – 175,441,795

668 bp 74 TFs 0 linked genes

This 668 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

ARID1A 1 dataset

ChIP NGP GSE134626.ARID1A.NGP 305 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap

BRD4 4 datasets

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 196 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 168 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 429 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 274 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 219 bp overlap

CTCF 3 datasets

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 141 bp overlap

ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 496 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

DMRTA2 1 dataset

Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 305 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 530 bp overlap

ChIP neural cell ENCFF442QNK 314 bp overlap

EZH2 5 datasets

ChIP PC-9 ENCSR793USK.EZH2.PC-9 170 bp overlap

ChIP THP-1 GSE135024.EZH2.THP-1 240 bp overlap

ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 319 bp overlap

ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 330 bp overlap

ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 271 bp overlap

EZH2_phosphoT487 2 datasets

ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 445 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 548 bp overlap

FLI1 1 dataset

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 625 bp overlap

ChIP DE DE-FOXA2-2 639 bp overlap

GABPA 1 dataset

ChIP MCF-7 GSE72082.GABPA.MCF-7 105 bp overlap

GATA2 3 datasets

ChIP SH-SY5Y ENCFF485YIB 384 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 321 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap

GATA3 1 dataset

ChIP Kelly GSE65664.GATA3.Kelly 214 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 538 bp overlap

ChIP DE DE-GATA4-2 566 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 392 bp overlap

GATA6 11 datasets

ChIP DE DE-GATA6-1 590 bp overlap

ChIP DE DE-GATA6-2 554 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 554 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 630 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 511 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 466 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 661 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 601 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 424 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 336 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 263 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 279 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 269 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 270 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

MAZ 1 dataset

ChIP HEK293 GSE76494.MAZ.HEK293 151 bp overlap

MEIS1 1 dataset

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

MGA::EVX1 2 datasets

Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 238 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 195 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 273 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 175 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 385 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 309 bp overlap

RAD21 2 datasets

ChIP neural ENCSR198ZYJ.RAD21.neural 460 bp overlap

ChIP neural cell ENCFF564MOT 404 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 186 bp overlap

REST 1 dataset

ChIP neural ENCSR000BTV.REST.neural 198 bp overlap

RNF2 1 dataset

ChIP K-562 ENCSR820GND.RNF2.K-562 280 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 551 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 341 bp overlap

SMARCA4 5 datasets

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 317 bp overlap

ChIP NGP GSE134626.SMARCA4.NGP 299 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 168 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 366 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 250 bp overlap

SMC3 1 dataset

ChIP neural ENCSR404BPV.SMC3.neural 638 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 233 bp overlap

SPI1 1 dataset

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 178 bp overlap

SUZ12 1 dataset

ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 338 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 314 bp overlap

TBR1 1 dataset

Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap

TBX19 1 dataset

Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap

TBX2 1 dataset

ChIP Kelly GSE94822.TBX2.Kelly 216 bp overlap

TBX21 1 dataset

Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap

TBXT 1 dataset

Motif DE_36h DE_36h-TBXT_MA0009.2 16 bp overlap

ZBTB6 1 dataset

Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap

ZEB1 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 142 bp overlap

ZNF157 1 dataset

Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap

ZNF41 1 dataset

ChIP HEK293 GSE76494.ZNF41.HEK293 217 bp overlap

ZNF416 1 dataset

Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 204 bp overlap

ZNF674 1 dataset

ChIP HEK293T GSE78099.ZNF674.HEK293T 151 bp overlap