chr2 : 139,183,540 139,184,555
1,015 bp 78 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:139,178,540 – 139,189,555
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DMRTA1 1 dataset
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 410 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 89 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 760 bp overlap
ChIP DE DE-FOXA2-2 668 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 929 bp overlap
ChIP DE DE-GATA4-2 786 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 482 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 265 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 473 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 738 bp overlap
ChIP DE DE-GATA6-2 734 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 684 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 446 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 568 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 664 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 554 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 569 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 321 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 491 bp overlap
GLI3 1 dataset
Motif DE_36h DE_36h-GLI3_MA1491.3 15 bp overlap
GRHL2 1 dataset
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
HSF2 1 dataset
Motif DE_36h DE_36h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
MAF 1 dataset
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MYB 1 dataset
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Nr2e1 1 dataset
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
Prdm4 1 dataset
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 2 datasets
Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
REST 1 dataset
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 804 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 667 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 737 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 867 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 417 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SNAI2 1 dataset
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF7L1 1 dataset
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
TGIF1 1 dataset
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
TWIST1 1 dataset
Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZBTB26 1 dataset
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 1 dataset
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF274 1 dataset
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF418 1 dataset
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF460 1 dataset
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
ZNF770 1 dataset
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
Zfp809 1 dataset
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap