chr2 : 129,192,779 129,193,313
534 bp 57 TFs 0 linked genes
This 534 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:129,187,779 – 129,198,313
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 243 bp overlap
BRD4 4 datasets
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 245 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 419 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 534 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 358 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 447 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 193 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 488 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 174 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCFF364ZWT 381 bp overlap
FOXA1 1 dataset
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 530 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 456 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 174 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 90 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 195 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 159 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 417 bp overlap
ChIP DE DE-GATA4-2 375 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 372 bp overlap
ChIP foregut GSE117136.GATA4.foregut 281 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 365 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 452 bp overlap
ChIP DE DE-GATA6-1 381 bp overlap
ChIP DE DE-GATA6-2 365 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 269 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 239 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 496 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 510 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 449 bp overlap
ChIP foregut GSE117136.GATA6.foregut 286 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 317 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 355 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 276 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 274 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 327 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 234 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 313 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 295 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 534 bp overlap
KLF5 4 datasets
ChIP AGS GSE51705.KLF5.AGS 260 bp overlap
ChIP HCC95 GSE88976.KLF5.HCC95 259 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 485 bp overlap
ChIP YCC-3 GSE51705.KLF5.YCC-3 141 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 498 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 392 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 397 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 461 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 361 bp overlap
MITF 4 datasets
ChIP 501-mel GSE137522.MITF.501-mel 263 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 160 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 270 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 261 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 373 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 163 bp overlap
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 168 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 145 bp overlap
NFYA 2 datasets
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
NFYC 2 datasets
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 230 bp overlap
PAX1 2 datasets
Motif DE_60h DE_60h-PAX1_MA0779.2 16 bp overlap
Motif DE_72h DE_72h-PAX1_MA0779.2 16 bp overlap
PAX9 2 datasets
Motif DE_60h DE_60h-PAX9_MA0781.2 16 bp overlap
Motif DE_72h DE_72h-PAX9_MA0781.2 16 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 265 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 279 bp overlap
ChIP islet ERP001456.PDX1.islet 133 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 361 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 56 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 373 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 189 bp overlap
POLR2A 4 datasets
ChIP body of pancreas ENCFF501FEC 534 bp overlap
ChIP body of pancreas ENCFF727UBE 399 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 300 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 296 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 534 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 260 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 240 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 326 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 470 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 258 bp overlap
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 170 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 308 bp overlap
SOX2 2 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 231 bp overlap
ChIP TT GSE46837.SOX2.TT 387 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 534 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 396 bp overlap
STAT3 2 datasets
ChIP HCC1937 GSE152203.STAT3.HCC1937 267 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 327 bp overlap
Stat6 1 dataset
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
TEAD1 3 datasets
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 239 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 365 bp overlap
TEAD4 2 datasets
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 374 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 213 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 114 bp overlap
USF1 3 datasets
ChIP HepG2 ENCFF807KYJ 181 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 100 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 127 bp overlap
ZNF16 2 datasets
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 77 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 462 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap