chr1 : 3,063,064 3,063,280
216 bp 43 TFs 1 linked gene
This 216 bp open chromatin element is linked to PRDM16-DT and is bound by 43 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM16-DT 505 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:3,058,064 – 3,068,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 175 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 175 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 216 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 71 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 145 bp overlap
BRD4 4 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 216 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 100 bp overlap
ChIP hESC GSE33281.BRD4.hESC 64 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 74 bp overlap
CHD4 1 dataset
ChIP HepG2 ENCFF615GUT 216 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 111 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 149 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 115 bp overlap
EZH2 9 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 139 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 82 bp overlap
ChIP H1 ENCFF232NZA 199 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 148 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 204 bp overlap
ChIP hepatocyte ENCFF552DZB 75 bp overlap
ChIP hepatocyte ENCFF552DZB 75 bp overlap
ChIP neural progenitor cell ENCFF018MKA 216 bp overlap
ChIP neural progenitor cell ENCFF472NFV 216 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 216 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 89 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 216 bp overlap
JARID2 1 dataset
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 68 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 127 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 71 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 60 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 90 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 143 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 102 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 57 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 146 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 157 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 99 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 216 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 103 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 183 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 216 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 177 bp overlap
RBM25 2 datasets
ChIP K562 ENCFF248CGR 109 bp overlap
ChIP K562 ENCFF957ORK 109 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 216 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 189 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 216 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 119 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 99 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 137 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 158 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 199 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 193 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 157 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 216 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 216 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 203 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 97 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 146 bp overlap
STAT3 6 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 147 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 216 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 188 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 187 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 175 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 216 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 216 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 65 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 165 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 63 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 63 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 165 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 216 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 109 bp overlap