chr2 : 31,299,050 – 31,300,156
1,106 bp 82 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to EHD3 and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EHD3 65.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:31,294,050 – 31,305,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
BACH2 3 datasets
Motif DE_48h DE_48h-BACH2_MA1470.2 19 bp overlap
Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
CREB1 5 datasets
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 312 bp overlap
ChIP HepG2 ENCFF792THT 162 bp overlap
ChIP MCF-7 ENCFF867SAS 417 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 435 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 290 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 200 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
EHF 3 datasets
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
Motif DE_60h DE_60h-EHF_MA0598.4 9 bp overlap
Motif DE_72h DE_72h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
ELF2 3 datasets
Motif DE_48h DE_48h-ELF2_MA1483.3 10 bp overlap
Motif DE_60h DE_60h-ELF2_MA1483.3 10 bp overlap
Motif DE_72h DE_72h-ELF2_MA1483.3 10 bp overlap
ELF3 3 datasets
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
Motif DE_72h DE_72h-ELF3_MA0640.3 9 bp overlap
ELK1::HOXA1 3 datasets
Motif DE_48h DE_48h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif DE_60h DE_60h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif DE_72h DE_72h-ELK1HOXA1_MA1931.1 14 bp overlap
ELK4 3 datasets
Motif DE_48h DE_48h-ELK4_MA0076.3 9 bp overlap
Motif DE_60h DE_60h-ELK4_MA0076.3 9 bp overlap
Motif DE_72h DE_72h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 231 bp overlap
ESR2 3 datasets
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
ETV1 3 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 3 datasets
Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_72h DE_72h-ETV5HOXA2_MA1948.2 12 bp overlap
Elf5 3 datasets
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
Erg 3 datasets
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FLI1::DRGX 3 datasets
Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap
Motif DE_60h DE_60h-FLI1DRGX_MA1949.2 14 bp overlap
Motif DE_72h DE_72h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA1 2 datasets
ChIP HepG2 ENCFF207NVJ 250 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 578 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 1106 bp overlap
ChIP DE DE-FOXA2-2 1106 bp overlap
ChIP HepG2 ENCFF570ABM 166 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 261 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 521 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GABPA 3 datasets
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 972 bp overlap
ChIP DE DE-GATA4-2 1067 bp overlap
ChIP foregut GSE117136.GATA4.foregut 687 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 877 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 932 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 707 bp overlap
ChIP DE DE-GATA6-2 1044 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 801 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 585 bp overlap
ChIP foregut GSE117136.GATA6.foregut 784 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 445 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 784 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 704 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 662 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HOXB2::ELK1 3 datasets
Motif DE_48h DE_48h-HOXB2ELK1_MA1957.1 14 bp overlap
Motif DE_60h DE_60h-HOXB2ELK1_MA1957.1 14 bp overlap
Motif DE_72h DE_72h-HOXB2ELK1_MA1957.1 14 bp overlap
IKZF2 3 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IRF5 3 datasets
Motif DE_48h DE_48h-IRF5_MA1420.1 14 bp overlap
Motif DE_60h DE_60h-IRF5_MA1420.1 14 bp overlap
Motif DE_72h DE_72h-IRF5_MA1420.1 14 bp overlap
Ikzf3 3 datasets
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 72 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 322 bp overlap
MAF 1 dataset
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
MEIS1 6 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA1639.2 9 bp overlap
Mafg 1 dataset
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 350 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 254 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 636 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 281 bp overlap
NR2C1 3 datasets
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 5 datasets
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR2F2 5 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 152 bp overlap
ChIP liver ENCFF427MRU 421 bp overlap
ChIP liver ENCFF565JGD 491 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 797 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 197 bp overlap
Nr1H2 3 datasets
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 2 datasets
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
PBX1 3 datasets
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 221 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 432 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 331 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 576 bp overlap
POU2F1 3 datasets
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU2F3 3 datasets
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU3F4 3 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
Motif DE_72h DE_72h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
POU5F1B 3 datasets
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_72h DE_72h-POU5F1B_MA0792.1 9 bp overlap
PPARA::RXRA 4 datasets
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_72h DE_72h-PPARARXRA_MA1148.2 17 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
Pparg::Rxra 1 dataset
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
RELA 4 datasets
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 286 bp overlap
Rarb 2 datasets
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 353 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1105 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1084 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 520 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 416 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 296 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 570 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 659 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 237 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 197 bp overlap
SPIB 3 datasets
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SPIC 3 datasets
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Sox1 2 datasets
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 169 bp overlap
ZBTB11 3 datasets
Motif DE_48h DE_48h-ZBTB11_MA2329.1 9 bp overlap
Motif DE_60h DE_60h-ZBTB11_MA2329.1 9 bp overlap
Motif DE_72h DE_72h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 3 datasets
Motif DE_48h DE_48h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_60h DE_60h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_72h DE_72h-ZBTB7A_MA0750.3 9 bp overlap
ZNF175 3 datasets
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap
Motif DE_72h DE_72h-ZNF175_MA2332.1 9 bp overlap
ZNF547 3 datasets
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF558 3 datasets
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF770 1 dataset
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Zic1::Zic2 1 dataset
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
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