chrX : 23,341,453 – 23,341,748
295 bp 94 TFs 1 linked gene
This 295 bp open chromatin element is linked to PTCHD1 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTCHD1 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:23,336,453 – 23,346,748
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 107 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 221 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 75 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
CTCF 41 datasets
ChIP GP5D GSE51234.CTCF.GP5D 138 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 182 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 136 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 292 bp overlap
ChIP astrocyte ENCFF042YJV 260 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 188 bp overlap
ChIP body of pancreas ENCFF269EDN 197 bp overlap
ChIP brain ENCFF163BBN 257 bp overlap
ChIP chondrocyte ENCFF134ORZ 179 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 252 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 165 bp overlap
ChIP endodermal cell ENCFF471YCZ 242 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 121 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 145 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 295 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 234 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 162 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 94 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 164 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 221 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 165 bp overlap
ChIP heart right ventricle ENCFF979TCT 295 bp overlap
ChIP hepatocyte ENCFF263BLJ 225 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 132 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 151 bp overlap
ChIP nephron ENCFF589HXU 61 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 295 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 178 bp overlap
ChIP neural crest cell ENCFF182LWK 295 bp overlap
ChIP neural progenitor cell ENCFF420RBO 270 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 189 bp overlap
ChIP pancreas ENCFF315CUI 295 bp overlap
ChIP pancreas ENCSR687APM.CTCF.pancreas 204 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 253 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 235 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 269 bp overlap
ChIP smooth muscle cell ENCFF656FBT 246 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 253 bp overlap
ChIP stomach ENCFF719DAZ 208 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 295 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 166 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
ELF1 6 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ChIP HCT-116 ENCSR000BVH.ELF1.HCT-116 152 bp overlap
ChIP HCT116 ENCFF354GUK 295 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 176 bp overlap
ELF2 3 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif DE_24h DE_24h-ELF2_MA1483.3 10 bp overlap
Motif DE_36h DE_36h-ELF2_MA1483.3 10 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 270 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 295 bp overlap
ELF4 3 datasets
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
Motif DE_24h DE_24h-ELF4_MA0641.1 12 bp overlap
Motif DE_36h DE_36h-ELF4_MA0641.1 12 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 219 bp overlap
Erg 3 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS::JUNB 1 dataset
Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap
FOSB::JUNB 1 dataset
Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 1 dataset
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 141 bp overlap
FOSL1::JUNB 1 dataset
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL2 3 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 160 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 203 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 1 dataset
Motif DE_12h DE_12h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 173 bp overlap
ChIP DE DE-FOXA2-2 277 bp overlap
FOXO1::ELF1 3 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
GABPA 3 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 295 bp overlap
ChIP DE DE-GATA4-2 290 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 220 bp overlap
ChIP DE DE-GATA6-2 295 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 210 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 295 bp overlap
GFI1 3 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
Ikzf3 3 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 295 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 295 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 295 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 295 bp overlap
JUND 1 dataset
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 172 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 137 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 295 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1H2::RXRA 2 datasets
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif DE_24h DE_24h-NR1H2RXRA_MA0115.1 17 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
PBX1 2 datasets
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 295 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 254 bp overlap
PPARD 2 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 177 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 201 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Runx1 3 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 116 bp overlap
SMAD2 3 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 172 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 295 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 295 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 295 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 295 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 295 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 295 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 295 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 295 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 215 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 211 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 215 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 62 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 295 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 225 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 295 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 225 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 135 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 235 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 180 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 7 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 220 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 272 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 228 bp overlap
ChIP HeLa-S3 ENCFF673QAB 295 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 295 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 277 bp overlap
ZBTB7A 3 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_24h DE_24h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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