chr22 : 26,661,184 – 26,661,602
418 bp 60 TFs 2 linked genes
This 418 bp open chromatin element is linked to ENSG00000278404 and MIAT and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000278404 3.7 kb Proximal Proximity
MIAT 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr22:26,656,184 – 26,666,602
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 2 datasets
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 201 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 79 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 253 bp overlap
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 248 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 122 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 133 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 232 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 217 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 245 bp overlap
BACH2 1 dataset
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 418 bp overlap
BRCA1 2 datasets
ChIP H1 ENCFF288NOI 261 bp overlap
ChIP WA01 ENCSR000EBX.BRCA1.WA01 127 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 418 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 234 bp overlap
ChIP K562 ENCFF673OEZ 407 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 350 bp overlap
DPF2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 215 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 418 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 418 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 327 bp overlap
ChIP MCF-7 ENCFF282FWZ 386 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 312 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 213 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 210 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 192 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 346 bp overlap
ChIP DE DE-FOXA2-2 224 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 418 bp overlap
ChIP foregut GSE117136.GATA4.foregut 418 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 302 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 398 bp overlap
ChIP DE DE-GATA6-2 418 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
ChIP foregut GSE117136.GATA6.foregut 379 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 418 bp overlap
ChIP K562 ENCFF055GAZ 262 bp overlap
ChIP K562 ENCFF317JJX 260 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 95 bp overlap
HSF1 4 datasets
ChIP HCT-116_A10_43 GSE152144.HSF1.HCT-116_A10_43 251 bp overlap
ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 202 bp overlap
ChIP U2OS_HEAT GSE60984.HSF1.U2OS_HEAT 120 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 146 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 415 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 418 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 392 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 359 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 340 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 418 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 303 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 203 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 236 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 250 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 321 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 376 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 368 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 210 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 393 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 418 bp overlap
MED1 2 datasets
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 302 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 277 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 304 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 395 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 121 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 189 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 100 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 418 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 268 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 146 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 97 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 313 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 265 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 267 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 151 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 361 bp overlap
ChIP H1 ENCFF896IJG 187 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 214 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 188 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 418 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 418 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 415 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 72 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 113 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 383 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 418 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 418 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 231 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 358 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 198 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 263 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 387 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 237 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 418 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 418 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 134 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 238 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 188 bp overlap
SOX2 19 datasets
ChIP H9 GSE46837.SOX2.H9 225 bp overlap
ChIP HCC95 GSE137459.SOX2.HCC95 179 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 334 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 131 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 204 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 275 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 217 bp overlap
ChIP NPC GSE122631.SOX2.NPC 224 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 200 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 150 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 81 bp overlap
ChIP TT GSE46837.SOX2.TT 204 bp overlap
ChIP hESC GSE69479.SOX2.hESC 139 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 215 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 180 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 109 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 196 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 259 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 198 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 353 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 115 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 397 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 418 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 418 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 265 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR189TRZ.TCF12.K-562 190 bp overlap
ChIP K562 ENCFF909RDY 264 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 389 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 215 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 283 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 54 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 111 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 291 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 115 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 180 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 259 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 418 bp overlap
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