chr20 : 8,518,829 – 8,519,539
710 bp 73 TFs 0 linked genes
This 710 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:8,513,829 – 8,524,539
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 224 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 182 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 144 bp overlap
CTCF 2 datasets
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 237 bp overlap
ELF1 4 datasets
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 136 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 112 bp overlap
ELF3 6 datasets
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
ChIP HepG2 ENCFF633ULY 320 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 280 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 257 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 222 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 204 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 131 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXA1 38 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 174 bp overlap
ChIP A1A3_Brg1KD_Dex GSE112491.FOXA1.A1A3_Brg1KD_Dex 200 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 314 bp overlap
ChIP HepG2 ENCFF207NVJ 125 bp overlap
ChIP HepG2 ENCFF740VZW 254 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 264 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 145 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 209 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 180 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 186 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 103 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 187 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 248 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 196 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 131 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 231 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 239 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 365 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 243 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 342 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 284 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 294 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 354 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 183 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 236 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 272 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 178 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 216 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 234 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 191 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 145 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 211 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 295 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 275 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 263 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 201 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 236 bp overlap
ChIP breast-cancer_ICI GSE101407.FOXA1.breast-cancer_ICI 166 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 291 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 281 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 111 bp overlap
ChIP DE DE-FOXA2-1 663 bp overlap
ChIP DE DE-FOXA2-2 659 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 277 bp overlap
ChIP HepG2 ENCFF570ABM 260 bp overlap
FOXA3 2 datasets
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
ChIP HepG2 ENCFF005KGL 318 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXI1 1 dataset
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
FOXP1 2 datasets
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 200 bp overlap
FOXP4 1 dataset
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 363 bp overlap
ChIP DE DE-GATA4-2 547 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 341 bp overlap
ChIP DE DE-GATA6-2 588 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 710 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 702 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 543 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 444 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 661 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 646 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 320 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 351 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 282 bp overlap
HAND2 2 datasets
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_24h DE_24h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
Hic1 1 dataset
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
IRF3 1 dataset
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 330 bp overlap
KLF17 2 datasets
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFYB 3 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 2 datasets
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 198 bp overlap
PAX6 1 dataset
Motif DE_36h DE_36h-PAX6_MA0069.1 14 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 222 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 112 bp overlap
PKNOX2 3 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
Plagl1 3 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Pparg::Rxra 1 dataset
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
RUNX3 1 dataset
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Runx1 2 datasets
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 2 datasets
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 371 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 639 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 392 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 416 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 547 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 407 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 352 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 316 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 317 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SPI1 5 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 120 bp overlap
ChIP GM12891 ENCFF563IUT 215 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 135 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 123 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 126 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 286 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 197 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 177 bp overlap
TGIF1 3 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
TGIF2 3 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
ZBTB6 2 datasets
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZIC1 2 datasets
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 276 bp overlap
ZIC4 2 datasets
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF213 2 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF320 3 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF331 3 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 108 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 213 bp overlap
ZNF610 2 datasets
Motif DE_36h DE_36h-ZNF610_MA1713.2 10 bp overlap
ChIP HEK293 ENCFF778UKJ 405 bp overlap
Zfp335 2 datasets
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 4 datasets
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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