chr19 : 12,748,546 – 12,749,020
474 bp 58 TFs 1 linked gene
This 474 bp open chromatin element is linked to BEST2 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BEST2 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:12,743,546 – 12,754,020
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AGO1 4 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 216 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 216 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 88 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 84 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 468 bp overlap
ChIP HepG2 ENCFF773YDL 468 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 225 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 194 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 222 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 199 bp overlap
BRD4 6 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 209 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 259 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 474 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 323 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 474 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 326 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 210 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 174 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 474 bp overlap
CHD2 1 dataset
ChIP K-562 ENCSR000EHD.CHD2.K-562 120 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 173 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 336 bp overlap
ChIP MCF-7_oeJUN GSE128445.ESR1.MCF-7_oeJUN 318 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 292 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 186 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 380 bp overlap
ChIP DE DE-FOXA2-2 380 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 240 bp overlap
ChIP DE DE-GATA4-2 347 bp overlap
GATA6 6 datasets
ChIP AGS GSE51936.GATA6.AGS 120 bp overlap
ChIP DE DE-GATA6-2 369 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 320 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 328 bp overlap
ChIP foregut GSE117136.GATA6.foregut 403 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 96 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 228 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 474 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 183 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 452 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 392 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 157 bp overlap
ChIP HEK293 ENCFF518OXG 357 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 214 bp overlap
JUN 3 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 383 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 269 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 346 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 230 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 266 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 165 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 474 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 74 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 178 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 379 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 396 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 303 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 269 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 258 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 212 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 199 bp overlap
POLR2A 1 dataset
ChIP GM19193 ENCFF599VTO 288 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 336 bp overlap
RBFOX2 3 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 339 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 245 bp overlap
ChIP K562 ENCFF967GRF 474 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 191 bp overlap
RBM39 4 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 246 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 249 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 215 bp overlap
ChIP K-562 GSE120104.RBM39.K-562 149 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 250 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 355 bp overlap
SIRT6 1 dataset
ChIP K-562 ENCSR000AUB.SIRT6.K-562 171 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 176 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 474 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 474 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 474 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 401 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 418 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 474 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 389 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 315 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 377 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 220 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 448 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 226 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 214 bp overlap
SUPT5H 9 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 230 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 461 bp overlap
ChIP HEK293_PNUTSW401A GSE134198.SUPT5H.HEK293_PNUTSW401A 264 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 130 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 247 bp overlap
ChIP K562 ENCFF902PAW 335 bp overlap
ChIP K562 ENCFF902PAW 317 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 239 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 139 bp overlap
SUPT6H 2 datasets
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 323 bp overlap
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 420 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 187 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 344 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 225 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 151 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 330 bp overlap
ChIP HEK293 ENCFF033NQQ 123 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 245 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 379 bp overlap
Huangfu Lab · Publications · Resources · Contact