chr18 : 49,905,054 49,905,920
866 bp 75 TFs 3 linked genes
This 866 bp open chromatin element is linked to SNHG22, ACAA2, and MYO5B and is bound by 75 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SNHG22 91.4 kb Distal Multiome
ACAA2 91.9 kb Distal Multiome
MYO5B 289.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:49,900,054 – 49,910,920
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARGFX 1 dataset
Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap
Arx 1 dataset
Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
EHF 1 dataset
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 371 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 127 bp overlap
ETV6 1 dataset
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 431 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 262 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 192 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 112 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 96 bp overlap
ChIP DE DE-FOXA2-1 834 bp overlap
ChIP DE DE-FOXA2-2 817 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 153 bp overlap
GATA3 4 datasets
ChIP Jurkat GSE29180.GATA3.Jurkat 260 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 257 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 206 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 180 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 676 bp overlap
ChIP DE DE-GATA4-2 711 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 553 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 281 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 746 bp overlap
ChIP DE DE-GATA6-2 722 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 637 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 684 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 866 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 714 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 691 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 712 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 542 bp overlap
ChIP foregut GSE117136.GATA6.foregut 361 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 286 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 264 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 714 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 641 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 866 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 112 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 97 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 193 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr5A2 1 dataset
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
Prdm14 1 dataset
Motif DE_36h DE_36h-Prdm14_MA1998.2 8 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 129 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 262 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 704 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 796 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 705 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 531 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 680 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 685 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 426 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 556 bp overlap
SMAD3 5 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 406 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 354 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 458 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 244 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 265 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 78 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 333 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 323 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 501 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP KG-1 GSE128834.SPI1.KG-1 135 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 294 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 65 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 171 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 120 bp overlap
Tfcp2l1 1 dataset
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB11 1 dataset
Motif DE_36h DE_36h-ZBTB11_MA2329.1 9 bp overlap
ZNF140 1 dataset
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF384 1 dataset
Motif DE_36h DE_36h-ZNF384_MA1125.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap