chr15 : 92,634,312 92,635,219
907 bp 57 TFs 4 linked genes
This 907 bp open chromatin element is linked to 4 target genes and is bound by 57 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
FAM174B 175.0 kb Distal Multiome
ST8SIA2 240.9 kb Distal Multiome
CHASERR 247.9 kb Distal Multiome
CHD2 265.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:92,629,312 – 92,640,219
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 202 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 137 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 120 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 573 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 472 bp overlap
BRD4 15 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 141 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 630 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 147 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 189 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 907 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 489 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 245 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 461 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 237 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 293 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 139 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 168 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 363 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 63 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 473 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 199 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 226 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 178 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 165 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 594 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 195 bp overlap
ChIP neural cell ENCFF442QNK 175 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 63 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 155 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 410 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 160 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 497 bp overlap
ChIP DE DE-FOXA2-1 167 bp overlap
ChIP DE DE-FOXA2-2 597 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 177 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 192 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 349 bp overlap
ChIP SK-N-SH ENCFF764OZD 333 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 310 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 309 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 250 bp overlap
ChIP SH-SY5Y ENCFF475HYF 411 bp overlap
ChIP SH-SY5Y ENCFF475HYF 212 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 294 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 793 bp overlap
ChIP DE DE-GATA4-2 803 bp overlap
ChIP foregut GSE117136.GATA4.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 312 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 346 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 633 bp overlap
ChIP DE DE-GATA6-2 824 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 656 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 624 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 210 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 706 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 718 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 617 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 723 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 368 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 201 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 628 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 336 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 171 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 386 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 130 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 243 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 232 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 175 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 209 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 65 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 745 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 218 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 552 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 155 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 821 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 445 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 800 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 709 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 645 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 442 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 153 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 304 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 94 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 94 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 429 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 696 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 176 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 434 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 75 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 272 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 135 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 907 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 887 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 447 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 320 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 710 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 393 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 846 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 709 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 245 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 292 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 176 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 439 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 258 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 252 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 191 bp overlap
ChIP neural cell ENCFF795YGY 309 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 140 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 101 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 113 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 479 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 453 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 58 bp overlap
ZNF319 2 datasets
ChIP K-562 ENCSR231PDA.ZNF319.K-562 279 bp overlap
ChIP K562 ENCFF561ZSB 271 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 411 bp overlap
ZNF579 2 datasets
ChIP MCF-7 ENCFF550XRS 153 bp overlap
ChIP MCF-7 ENCSR018MQH.ZNF579.MCF-7 133 bp overlap