chr1 : 236,692,062 – 236,692,503
441 bp 47 TFs 1 linked gene
This 441 bp open chromatin element is linked to ACTN2 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ACTN2 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:236,687,062 – 236,697,503
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 129 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 213 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 159 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 245 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 117 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 230 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 313 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 322 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 441 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 287 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 405 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 441 bp overlap
ESR1 4 datasets
ChIP ZR751 ERP000783.ESR1.ZR751 170 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 198 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 293 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 203 bp overlap
EZH2 2 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 349 bp overlap
ChIP neural progenitor cell ENCFF018MKA 383 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 300 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 279 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 322 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 342 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 258 bp overlap
FOXA1 44 datasets
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 315 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 229 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 201 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 266 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 298 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 395 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 278 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 281 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 136 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 200 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 171 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 187 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 153 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 110 bp overlap
ChIP MCF-7 ENCFF465LTH 165 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 288 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 177 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 311 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 213 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 403 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 208 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 205 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 227 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 321 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 371 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 319 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 288 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 344 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 309 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 238 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 233 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 206 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 203 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 328 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 343 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 347 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 318 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 320 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 323 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 367 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 265 bp overlap
ChIP breast_tumor_Female_7 GSE104399.FOXA1.breast_tumor_Female_7 216 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 277 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 391 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 380 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 371 bp overlap
ChIP DE DE-FOXA2-1 380 bp overlap
ChIP DE DE-FOXA2-2 382 bp overlap
GATA2 6 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 246 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 246 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 233 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 205 bp overlap
ChIP SH-SY5Y ENCFF485YIB 255 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 190 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 180 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 236 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 240 bp overlap
ChIP MCF-7 ENCFF352QVM 379 bp overlap
ChIP NGP GSE65664.GATA3.NGP 247 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 212 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 368 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 215 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 197 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 441 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
ChIP foregut GSE117136.GATA4.foregut 441 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 313 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 276 bp overlap
ChIP DE DE-GATA6-2 391 bp overlap
ChIP foregut GSE117136.GATA6.foregut 268 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 441 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 358 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 220 bp overlap
HNF1B 2 datasets
ChIP PDAC GSE64557.HNF1B.PDAC 400 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 348 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 254 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 241 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 367 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 152 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 119 bp overlap
MAFK 4 datasets
ChIP A549 ENCFF371EPR 239 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 105 bp overlap
ChIP HepG2 ENCFF743ZOF 185 bp overlap
ChIP HepG2 ENCFF767LDG 175 bp overlap
MED1 4 datasets
ChIP G296S GSE85628.MED1.G296S 441 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 441 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 441 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 67 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 258 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 280 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 251 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 362 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 213 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 108 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 441 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 405 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 351 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 252 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 397 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 302 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 398 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 387 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 236 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 360 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 317 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 176 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 315 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 359 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 362 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 441 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 364 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 160 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 152 bp overlap
STAT3 3 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 191 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 243 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 185 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 312 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 73 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 160 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 263 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 263 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 240 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 248 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 76 bp overlap
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