chr1 : 235,893,973 235,894,169
196 bp 41 TFs 0 linked genes
This 196 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:235,888,973 – 235,899,169
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ATF3 2 datasets
ChIP liver ENCFF375GID 196 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 196 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 139 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 139 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 160 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 110 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 132 bp overlap
CTCF 1 dataset
ChIP hepatocyte ERP000395.CTCF.hepatocyte 64 bp overlap
EGR1 1 dataset
ChIP liver ENCFF130MBW 196 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 196 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 156 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 196 bp overlap
ChIP DE DE-GATA4-2 196 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 183 bp overlap
ChIP foregut GSE117136.GATA4.foregut 196 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 196 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 196 bp overlap
ChIP DE DE-GATA6-1 196 bp overlap
ChIP DE DE-GATA6-2 196 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 196 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 196 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 196 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 196 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 196 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 196 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 191 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 196 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 196 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 196 bp overlap
ChIP foregut GSE117136.GATA6.foregut 196 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 196 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 196 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 196 bp overlap
HNF4A 7 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 140 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 131 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 196 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 96 bp overlap
ChIP liver ENCFF354NRH 196 bp overlap
ChIP liver ENCFF449HPV 196 bp overlap
ChIP liver ERP002306.HNF4A.liver 181 bp overlap
HNF4G 1 dataset
ChIP liver ENCSR297GII.HNF4G.liver 196 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 129 bp overlap
JUND 3 datasets
ChIP liver ENCFF007WWT 196 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 196 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 196 bp overlap
KLF5 3 datasets
ChIP AGS GSE51705.KLF5.AGS 141 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 196 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 196 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 196 bp overlap
MAX 2 datasets
ChIP liver ENCSR847DIT.MAX.liver 196 bp overlap
ChIP liver ENCSR521IID.MAX.liver 196 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 196 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 174 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 191 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 196 bp overlap
POLR2A 3 datasets
ChIP right lobe of liver ENCFF026NCK 159 bp overlap
ChIP stomach ENCFF607ZPU 196 bp overlap
ChIP stomach ENCFF820WZN 109 bp overlap
PPARG 4 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 194 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 196 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF329FBJ 196 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 88 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 196 bp overlap
ChIP liver ENCFF522JHE 184 bp overlap
REST 3 datasets
ChIP liver ENCFF240FWT 196 bp overlap
ChIP liver ENCSR867WPH.REST.liver 164 bp overlap
ChIP liver ENCSR893QWP.REST.liver 196 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 103 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 196 bp overlap
ChIP liver ENCFF807CIA 196 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 188 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 196 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 175 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 136 bp overlap
ChIP liver ENCFF769YSM 196 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 148 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 119 bp overlap
STAT3 1 dataset
ChIP HCC1937 GSE152203.STAT3.HCC1937 167 bp overlap
TAF1 2 datasets
ChIP liver ENCFF610UQP 196 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 196 bp overlap
TEAD4 1 dataset
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 150 bp overlap
YY1 3 datasets
ChIP liver ENCFF400MBC 196 bp overlap
ChIP liver ENCFF515BWJ 196 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 196 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 93 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 148 bp overlap