chr15 : 69,290,511 69,291,221
710 bp 40 TFs 5 linked genes
This 710 bp open chromatin element is linked to 5 target genes and is bound by 40 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
PAQR5-DT 7.6 kb Proximal Proximity
PAQR5 7.7 kb Proximal Proximity
KIF23 123.4 kb Distal Multiome
GLCE 130.3 kb Distal Multiome
RPLP1 161.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:69,285,511 – 69,296,221
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 175 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 435 bp overlap
ChIP K562 ENCFF817JQF 516 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 303 bp overlap
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 152 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 110 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 201 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 186 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 284 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 109 bp overlap
E2F1 1 dataset
ChIP K-562 ENCSR720HUL.E2F1.K-562 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
EP300 4 datasets
ChIP tibial nerve ENCFF346AYA 373 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap
ChIP upper lobe of left lung ENCFF720RAR 241 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 143 bp overlap
ESR1 2 datasets
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 271 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 202 bp overlap
FOXA1 6 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 129 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 186 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 222 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 262 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 225 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 231 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 139 bp overlap
ChIP DE DE-FOXA2-1 645 bp overlap
ChIP DE DE-FOXA2-2 593 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 134 bp overlap
GATA4 6 datasets
ChIP A-549 GSE85002.GATA4.A-549 187 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 317 bp overlap
ChIP DE DE-GATA4-1 523 bp overlap
ChIP DE DE-GATA4-2 571 bp overlap
ChIP foregut GSE117136.GATA4.foregut 484 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 489 bp overlap
GATA6 8 datasets
ChIP AGS GSE51705.GATA6.AGS 176 bp overlap
ChIP DE DE-GATA6-1 447 bp overlap
ChIP DE DE-GATA6-2 599 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 162 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 480 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 307 bp overlap
HDAC2 1 dataset
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 236 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 274 bp overlap
KDM1A 10 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 323 bp overlap
ChIP H1 ENCFF696SGD 380 bp overlap
ChIP HepG2 ENCFF240UWG 489 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 235 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 238 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 195 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 254 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 402 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 328 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 335 bp overlap
MED1 4 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 336 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 248 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 188 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 274 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 276 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 166 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 146 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 107 bp overlap
POLR2A 4 datasets
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 136 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 345 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 374 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 186 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 328 bp overlap
ChIP K562 ENCFF248CGR 174 bp overlap
ChIP K562 ENCFF957ORK 174 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 302 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 251 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 555 bp overlap
SMAD4 2 datasets
ChIP HGrC1_EV GSE138496.SMAD4.HGrC1_EV 162 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 236 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 279 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 255 bp overlap
TP63 3 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 75 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 144 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 107 bp overlap
ZMYM3 7 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 276 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 274 bp overlap
ChIP HepG2 ENCFF408KTI 293 bp overlap
ChIP HepG2 ENCFF667RVD 339 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 309 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 323 bp overlap
ChIP K562 ENCFF361LXT 345 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 323 bp overlap
ChIP HepG2 ENCFF490FFQ 322 bp overlap