chr15 : 41,636,747 41,637,351
604 bp 46 TFs 6 linked genes
This 604 bp open chromatin element is linked to 6 target genes and is bound by 46 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
MGA 15.5 kb Distal Multiome
TYRO3 77.8 kb Distal Multiome
RPAP1 92.8 kb Distal Multiome
MAPKBP1 137.4 kb Distal Multiome
RTF1 219.9 kb Distal Multiome
NDUFAF1 234.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:41,631,747 – 41,642,351
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 203 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 245 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 449 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 137 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 267 bp overlap
ChIP DE DE-FOXA2-1 604 bp overlap
ChIP DE DE-FOXA2-2 579 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 218 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 299 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 260 bp overlap
GATA2 4 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 164 bp overlap
ChIP HepG2 ENCFF905PYM 332 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 175 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 283 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 604 bp overlap
ChIP DE DE-GATA4-2 604 bp overlap
ChIP foregut GSE117136.GATA4.foregut 604 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 532 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 500 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 120 bp overlap
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 604 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 589 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 536 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 448 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 604 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 511 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 569 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 553 bp overlap
ChIP foregut GSE117136.GATA6.foregut 604 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 511 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 489 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 503 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 496 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 450 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 243 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 355 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 390 bp overlap
HNF4A 1 dataset
ChIP HepG2 ENCFF146SSF 238 bp overlap
LCORL 2 datasets
ChIP Hep-G2 ENCSR950NAZ.LCORL.Hep-G2 239 bp overlap
ChIP HepG2 ENCFF659AVU 331 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR000BRO.MYBL2.Hep-G2 119 bp overlap
MYC 1 dataset
ChIP HFF_OHT_SHBPTF GSE65544.MYC.HFF_OHT_SHBPTF 185 bp overlap
NR2F1 3 datasets
ChIP HepG2 ENCFF518ZRY 287 bp overlap
ChIP HepG2 ENCFF953UJL 273 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 413 bp overlap
NR2F2 2 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 369 bp overlap
ChIP HepG2 ENCFF483TVJ 285 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 370 bp overlap
ChIP HepG2 ENCFF429VKC 309 bp overlap
ChIP HepG2 ENCFF514UJI 229 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 392 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 260 bp overlap
ONECUT1 5 datasets
ChIP H9 ERP004206.ONECUT1.H9 89 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 195 bp overlap
ChIP HepG2 ENCFF243FIR 85 bp overlap
ChIP liver ERP002306.ONECUT1.liver 93 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 238 bp overlap
ONECUT2 1 dataset
ChIP HepG2 ENCFF460COO 275 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 299 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 125 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 282 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 550 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 313 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 546 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 462 bp overlap
SMAD3 2 datasets
ChIP endoderm GSE29422.SMAD3.endoderm 169 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 218 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 262 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 149 bp overlap
SOX13 2 datasets
ChIP HepG2 ENCFF062VSQ 232 bp overlap
ChIP HepG2 ENCFF231PAK 208 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 585 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 604 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 156 bp overlap
SOX6 4 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 264 bp overlap
ChIP HepG2 ENCFF767OCK 369 bp overlap
ChIP K-562 ENCSR788RSW.SOX6.K-562 394 bp overlap
ChIP K562 ENCFF059YCJ 434 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 233 bp overlap
TCF7L2 2 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 163 bp overlap
ChIP HepG2 ENCFF510OLG 271 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR322CFO.ZEB2.K-562 247 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 191 bp overlap