chr1 : 232,057,279 – 232,058,822
1,543 bp 61 TFs 1 linked gene
This 1.5 kb open chromatin element is linked to ENSG00000235152 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000235152 102.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:232,052,279 – 232,063,822
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 116 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 201 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 189 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPA 4 datasets
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPD 4 datasets
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CTCF 41 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 253 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 164 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 85 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 188 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 297 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 145 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 165 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 194 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 129 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 136 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 166 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 189 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 238 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 106 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 207 bp overlap
ChIP endodermal cell ENCFF471YCZ 128 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 242 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 272 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 188 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 170 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 182 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 168 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 195 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 205 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF262VBH 235 bp overlap
ChIP BLaER1 ENCFF274GAT 346 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 366 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 246 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 125 bp overlap
EZH2_phosphoT487 2 datasets
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 574 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 269 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 155 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 459 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 299 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 197 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 361 bp overlap
ChIP DE DE-FOXA2-1 1392 bp overlap
ChIP DE DE-FOXA2-2 1342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 482 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 178 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 502 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 204 bp overlap
ChIP DE DE-GATA4-1 1318 bp overlap
ChIP DE DE-GATA4-2 1196 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 548 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 255 bp overlap
ChIP foregut GSE117136.GATA4.foregut 441 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 907 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 525 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 466 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 305 bp overlap
ChIP DE DE-GATA6-1 1153 bp overlap
ChIP DE DE-GATA6-2 1219 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 260 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 414 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 760 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 227 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1024 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 537 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 350 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 491 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
ChIP foregut GSE117136.GATA6.foregut 450 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 561 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 439 bp overlap
Gmeb1 1 dataset
Motif DE_60h DE_60h-Gmeb1_MA0615.2 6 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 116 bp overlap
IRF2 4 datasets
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
Motif DE_72h DE_72h-IRF2_MA0051.2 16 bp overlap
IRF5 4 datasets
Motif DE_36h DE_36h-IRF5_MA1420.1 14 bp overlap
Motif DE_48h DE_48h-IRF5_MA1420.1 14 bp overlap
Motif DE_60h DE_60h-IRF5_MA1420.1 14 bp overlap
Motif DE_72h DE_72h-IRF5_MA1420.1 14 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 437 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 228 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 459 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 349 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 279 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 363 bp overlap
MYB 4 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 354 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 378 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 273 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 143 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 276 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 369 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 307 bp overlap
NFIL3 1 dataset
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 289 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 324 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 112 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 166 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 92 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 228 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 137 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 148 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RORB 4 datasets
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
RUNX1 1 dataset
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 137 bp overlap
RUNX3 4 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1283 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 690 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1211 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 452 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 218 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1284 bp overlap
SOX21 4 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SPI1 8 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 106 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 191 bp overlap
ChIP HL-60 ENCFF645GBT 218 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 191 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 121 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 130 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 96 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 148 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 333 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 246 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 168 bp overlap
USF1 1 dataset
ChIP H1 ENCFF090WVU 170 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 236 bp overlap
ZFX 2 datasets
ChIP HCT116 ENCFF324IZY 608 bp overlap
ChIP HEK293T ENCFF402JZW 567 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF384 1 dataset
Motif DE_48h DE_48h-ZNF384_MA1125.2 8 bp overlap
ZNF85 1 dataset
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
ZSCAN21 1 dataset
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
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