chr1 : 230,232,371 230,232,899
528 bp 84 TFs 0 linked genes
This 528 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,227,371 – 230,237,899
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 142 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 184 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 257 bp overlap
BRD4 2 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 262 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 148 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CEBPB 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 160 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 60 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 187 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
E2F6 1 dataset
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 211 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 377 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 528 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ChIP neural cell ENCFF442QNK 315 bp overlap
FLI1 7 datasets
ChIP A-673 GSE99959.FLI1.A-673 456 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 491 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 444 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 373 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 446 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 444 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 302 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 326 bp overlap
ChIP DE DE-FOXA2-2 297 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 273 bp overlap
ChIP DE DE-GATA4-2 355 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 370 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 421 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 379 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 421 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 125 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXD3 1 dataset
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 449 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 226 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 299 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 257 bp overlap
MAFF 1 dataset
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
ChIP A-673 GSE109477.MEIS1.A-673 192 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 528 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 512 bp overlap
Mafb 1 dataset
Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 144 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 528 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 426 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 145 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 528 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 488 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 367 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NKX3-1 2 datasets
ChIP islet ERP004003.NKX3-1.islet 183 bp overlap
ChIP islet ERP004003.NKX3-1.islet 59 bp overlap
Nkx3-1 1 dataset
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PHF8 1 dataset
ChIP K562 ENCFF217UCA 196 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 456 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 84 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 309 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 458 bp overlap
RAD21 3 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 435 bp overlap
ChIP neural cell ENCFF564MOT 423 bp overlap
ChIP neural cell ENCFF564MOT 406 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 264 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
REST 4 datasets
ChIP neural ENCSR000BTV.REST.neural 301 bp overlap
ChIP neural ENCSR000BTV.REST.neural 136 bp overlap
ChIP neural cell ENCFF882LXX 489 bp overlap
ChIP neural cell ENCFF882LXX 344 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 142 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 367 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 378 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 255 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 261 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 422 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 395 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 357 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 221 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 442 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 378 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 418 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 454 bp overlap
SMARCC1 4 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 461 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 146 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 386 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 360 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 63 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 326 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 221 bp overlap
SPI1 9 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 273 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 146 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 170 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
ChIP OCI-Ly3 GSE56857.SPI1.OCI-Ly3 151 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 194 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 195 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 186 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 295 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 372 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFDP1 1 dataset
Motif DE_36h DE_36h-TFDP1_MA1122.2 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 528 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 528 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap