chr14 : 74,350,632 – 74,350,973
341 bp 52 TFs 1 linked gene
This 341 bp open chromatin element is linked to VRTN and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VRTN 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:74,345,632 – 74,355,973
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 15 datasets
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 179 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 161 bp overlap
ChIP LNCaP GSE43720.AR.LNCaP 136 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 119 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 192 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 232 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 186 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 143 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 112 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 132 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 220 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 165 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 112 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 137 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 131 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 69 bp overlap
ChIP K562 ENCFF343XWA 89 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 141 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 236 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 341 bp overlap
CEBPB 2 datasets
ChIP MCF-7 ENCFF772ZTQ 207 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 154 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 264 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 110 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 269 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 341 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 128 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 266 bp overlap
FOXA1 8 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 67 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 125 bp overlap
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 67 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 103 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 187 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 140 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 73 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 232 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 50 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 92 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 128 bp overlap
ChIP DE DE-FOXA2-1 341 bp overlap
ChIP DE DE-FOXA2-2 341 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 195 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 341 bp overlap
ChIP DE DE-GATA4-2 341 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 217 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 116 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 341 bp overlap
ChIP DE DE-GATA6-2 341 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 289 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 332 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 201 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 276 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 303 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 67 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 119 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 70 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 101 bp overlap
KDM1A 3 datasets
ChIP H1 ENCFF696SGD 195 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 152 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 101 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 87 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 120 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 140 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 214 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 275 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 172 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 50 bp overlap
RBM25 2 datasets
ChIP K562 ENCFF248CGR 50 bp overlap
ChIP K562 ENCFF957ORK 50 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 112 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 248 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 213 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 127 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 101 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 56 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 117 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 341 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 231 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 232 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 189 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 322 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 280 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 236 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 307 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 150 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 251 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 68 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF265CEM 341 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 112 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 112 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 335 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 215 bp overlap
ZMYM3 1 dataset
ChIP K562 ENCFF361LXT 64 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 341 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 324 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 178 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 152 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 204 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 70 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 58 bp overlap
ZNF664 1 dataset
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 118 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 185 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 180 bp overlap
Huangfu Lab · Publications · Resources · Contact