chr13 : 102,045,797 – 102,046,185
388 bp 70 TFs 1 linked gene
This 388 bp open chromatin element is linked to MIR4705 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MIR4705 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:102,040,797 – 102,051,185
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
BARX1 2 datasets
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 388 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 388 bp overlap
BSX 2 datasets
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 258 bp overlap
CTCF 6 datasets
ChIP BE2C ENCSR000DQD.CTCF.BE2C 111 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 66 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 115 bp overlap
ChIP islet ERP004003.CTCF.islet 65 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 253 bp overlap
ChIP neural cell ENCFF335ADI 170 bp overlap
DLX1 2 datasets
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 2 datasets
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 179 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 174 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 388 bp overlap
ChIP neural cell ENCFF442QNK 388 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 138 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 230 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 387 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 199 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 145 bp overlap
ChIP SK-N-SH ENCFF764OZD 73 bp overlap
ChIP SK-N-SH ENCFF764OZD 275 bp overlap
GATA3 2 datasets
ChIP BE2C GSE65664.GATA3.BE2C 127 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 253 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 330 bp overlap
ChIP DE DE-GATA4-2 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 285 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 352 bp overlap
ChIP DE DE-GATA6-2 224 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 380 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 388 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 372 bp overlap
GBX2 2 datasets
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 69 bp overlap
HESX1 2 datasets
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA5 2 datasets
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXA6 2 datasets
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 2 datasets
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 2 datasets
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx2 2 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 2 datasets
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 388 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 281 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 302 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
LBX2 2 datasets
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MSX1 2 datasets
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 286 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Msx3 2 datasets
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Nobox 2 datasets
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 180 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 272 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 257 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 103 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 255 bp overlap
RAD21 3 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 388 bp overlap
ChIP neural cell ENCFF564MOT 319 bp overlap
ChIP neural cell ENCFF564MOT 374 bp overlap
RARA 2 datasets
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 260 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 388 bp overlap
RAX 2 datasets
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 388 bp overlap
ChIP neural cell ENCFF882LXX 388 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 289 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 275 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 283 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 267 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 352 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 388 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 388 bp overlap
ChIP neural cell ENCFF795YGY 328 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 335 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 121 bp overlap
TAF2 1 dataset
ChIP hESC GSE17917.TAF2.hESC 115 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 238 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 220 bp overlap
TP63 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 352 bp overlap
ZFP30 1 dataset
ChIP SK-N-SH ENCFF375XBD 153 bp overlap
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