chr1 : 219,574,539 – 219,575,315
776 bp 62 TFs 0 linked genes
This 776 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:219,569,539 – 219,580,315
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 253 bp overlap
BARHL1 4 datasets
Motif DE_36h DE_36h-BARHL1_MA0877.4 6 bp overlap
Motif DE_48h DE_48h-BARHL1_MA0877.4 6 bp overlap
Motif DE_60h DE_60h-BARHL1_MA0877.4 6 bp overlap
Motif DE_72h DE_72h-BARHL1_MA0877.4 6 bp overlap
BARHL2 4 datasets
Motif DE_36h DE_36h-BARHL2_MA0635.2 6 bp overlap
Motif DE_48h DE_48h-BARHL2_MA0635.2 6 bp overlap
Motif DE_60h DE_60h-BARHL2_MA0635.2 6 bp overlap
Motif DE_72h DE_72h-BARHL2_MA0635.2 6 bp overlap
BARX2 2 datasets
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 256 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 274 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 285 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 182 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 141 bp overlap
ChIP PC-3 GSE147455.CREBBP.PC-3 130 bp overlap
DMRTA2 2 datasets
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 281 bp overlap
ERF::NHLH1 2 datasets
Motif DE_36h DE_36h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_48h DE_48h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 4 datasets
ChIP MCF-7_800 GSE115607.ESR1.MCF-7_800 219 bp overlap
ChIP MCF-7_H3B-5942 GSE115607.ESR1.MCF-7_H3B-5942 282 bp overlap
ChIP MCF-7_H3B-6545 GSE115607.ESR1.MCF-7_H3B-6545 246 bp overlap
ChIP MCF-7_s5942 GSE115607.ESR1.MCF-7_s5942 186 bp overlap
FLI1 1 dataset
ChIP ME-1 GSE46044.FLI1.ME-1 254 bp overlap
FOXA1 3 datasets
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 177 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 452 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 367 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 748 bp overlap
ChIP DE DE-FOXA2-2 655 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 183 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 621 bp overlap
ChIP DE DE-GATA4-2 758 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 352 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 513 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 440 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 565 bp overlap
ChIP DE DE-GATA6-2 776 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 418 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 401 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 394 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 596 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 521 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 332 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 360 bp overlap
HOXA4 2 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXB4 4 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC13 3 datasets
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap
HOXC4 4 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 4 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
HSF1 2 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
MTF1 2 datasets
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
Motif DE_60h DE_60h-MTF1_MA0863.1 14 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
NFIC 3 datasets
ChIP GM12878 ENCFF259FWL 300 bp overlap
ChIP GM12878 ENCFF259FWL 536 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 277 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 420 bp overlap
NFKB2 4 datasets
Motif DE_36h DE_36h-NFKB2_MA0778.2 11 bp overlap
Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap
Motif DE_60h DE_60h-NFKB2_MA0778.2 11 bp overlap
ChIP L1236 GSE63736.NFKB2.L1236 475 bp overlap
NKX2-3 3 datasets
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 726 bp overlap
PBX3 2 datasets
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PGR 2 datasets
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
Motif DE_48h DE_48h-PGR_MA2327.1 9 bp overlap
PKNOX1 2 datasets
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
PRDM9 5 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
REL 4 datasets
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
Motif DE_48h DE_48h-REL_MA0101.1 10 bp overlap
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RELA 10 datasets
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 336 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
ChIP MCF-7_E2_TNF GSE59530.RELA.MCF-7_E2_TNF 154 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 396 bp overlap
ChIP MCF-7_TNF GSE59530.RELA.MCF-7_TNF 249 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 426 bp overlap
RELB 5 datasets
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
Motif DE_48h DE_48h-RELB_MA1117.2 7 bp overlap
Motif DE_60h DE_60h-RELB_MA1117.2 7 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 354 bp overlap
ChIP L1236 GSE63736.RELB.L1236 378 bp overlap
Rhox11 2 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
SIX1 2 datasets
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
SMAD2 2 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 589 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 397 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 231 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 172 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 226 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 405 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 174 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 402 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 257 bp overlap
SOX12 2 datasets
Motif DE_48h DE_48h-SOX12_MA1561.2 10 bp overlap
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 701 bp overlap
SPI1 1 dataset
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
TCF7L2 4 datasets
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 452 bp overlap
ChIP Panc1 ENCFF829HHL 584 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 310 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 221 bp overlap
TP63 2 datasets
Motif DE_36h DE_36h-TP63_MA0525.2 18 bp overlap
Motif DE_48h DE_48h-TP63_MA0525.2 18 bp overlap
VEZF1 3 datasets
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZNF16 2 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF528 2 datasets
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF530 2 datasets
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
ZNF547 2 datasets
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF75A 3 datasets
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF766 3 datasets
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
ChIP HEK293T GSE78099.ZNF766.HEK293T 146 bp overlap
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