chr12 : 96,846,238 – 96,847,032

794 bp 68 TFs 0 linked genes

This 794 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

AR 1 dataset

ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 153 bp overlap

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

CEBPA 3 datasets

ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 253 bp overlap

ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 198 bp overlap

ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 131 bp overlap

Cebpa 4 datasets

ChIP BLaER1 ENCFF093OYK 241 bp overlap

ChIP BLaER1 ENCFF346MCV 325 bp overlap

ChIP BLaER1 ENCFF364PUR 333 bp overlap

ChIP BLaER1 ENCFF460KDD 216 bp overlap

Dmrt1 1 dataset

Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap

E2F6 1 dataset

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

EP300 2 datasets

ChIP AML GSE131939.EP300.AML 138 bp overlap

ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 108 bp overlap

ERG 2 datasets

ChIP SKNO-1 GSE23730.ERG.SKNO-1 216 bp overlap

ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 190 bp overlap

ESR1 1 dataset

ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 177 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FLI1 2 datasets

ChIP NB4 GSE23730.FLI1.NB4 129 bp overlap

ChIP UAE GSE23730.FLI1.UAE 250 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

HLF 2 datasets

ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 182 bp overlap

ChIP HepG2 ENCFF854JLR 234 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IRF2 2 datasets

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

KDM1A 1 dataset

ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 130 bp overlap

LDB1 2 datasets

ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 181 bp overlap

ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 197 bp overlap

LMO2 1 dataset

ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 141 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MYC 1 dataset

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 144 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Nkx2-1 1 dataset

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 229 bp overlap

PLAG1 1 dataset

Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap

POU5F1 1 dataset

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 166 bp overlap

PPARG 2 datasets

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 102 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

RUNX1 2 datasets

ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 158 bp overlap

ChIP NB4 GSE81992.RUNX1.NB4 303 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SIX2 5 datasets

Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 348 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 257 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 365 bp overlap

SIX5 2 datasets

ChIP H1 ENCFF942SOJ 237 bp overlap

ChIP WA01 ENCSR000BIQ.SIX5.WA01 139 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 216 bp overlap

SOX2 1 dataset

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 351 bp overlap

SOX21 1 dataset

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

SPI1 6 datasets

ChIP HL-60 ENCFF645GBT 179 bp overlap

ChIP KG-1 GSE128834.SPI1.KG-1 141 bp overlap

ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 178 bp overlap

ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 144 bp overlap

ChIP NB4 GSE128834.SPI1.NB4 141 bp overlap

ChIP U-937 GSE128834.SPI1.U-937 145 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Six3 2 datasets

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

TCF12 1 dataset

ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 221 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 4 datasets

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 386 bp overlap

ChIP HCT116 ENCFF038POZ 371 bp overlap

ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 230 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZKSCAN1 1 dataset

Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF341 1 dataset

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

ZNF382 1 dataset

Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF677 1 dataset

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

Zfp961 1 dataset

Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap