chr12 : 96,623,746 – 96,624,366
620 bp 70 TFs 0 linked genes
This 620 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:96,618,746 – 96,629,366
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 116 bp overlap
Ascl2 2 datasets
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BHLHE22 2 datasets
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 2 datasets
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 332 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 323 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 244 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 481 bp overlap
CTCF 4 datasets
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 115 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 119 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 300 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 288 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 353 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 165 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 149 bp overlap
EZH2 2 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 92 bp overlap
ChIP neural progenitor cell ENCFF018MKA 491 bp overlap
EZH2_phosphoT487 2 datasets
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 209 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 426 bp overlap
FERD3L 1 dataset
Motif DE_72h DE_72h-FERD3L_MA1485.1 14 bp overlap
FOXA1 2 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 168 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 161 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 231 bp overlap
ChIP DE DE-FOXA2-1 574 bp overlap
ChIP DE DE-FOXA2-2 585 bp overlap
ChIP PC-3_GSK GSE148982.FOXA2.PC-3_GSK 196 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXD3 2 datasets
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 227 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 227 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 187 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 358 bp overlap
ChIP DE DE-GATA4-1 593 bp overlap
ChIP DE DE-GATA4-2 620 bp overlap
ChIP foregut GSE117136.GATA4.foregut 390 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 501 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 562 bp overlap
ChIP DE DE-GATA6-2 612 bp overlap
ChIP foregut GSE117136.GATA6.foregut 304 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 452 bp overlap
HOXB13 1 dataset
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 156 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 170 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
MAF::NFE2 1 dataset
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 310 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 290 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MSC 2 datasets
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYF5 2 datasets
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYF6 2 datasets
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 3 datasets
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 175 bp overlap
Mecom 2 datasets
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Msgn1 1 dataset
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 476 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 442 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 324 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 349 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 392 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 292 bp overlap
Neurod2 4 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 403 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 162 bp overlap
Olig2 2 datasets
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
Ptf1A 2 datasets
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 245 bp overlap
RARA 2 datasets
Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap
Motif DE_72h DE_72h-RARA_MA0729.1 18 bp overlap
RELA 1 dataset
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 144 bp overlap
RORB 2 datasets
ChIP WTC11 ENCFF444ARW 237 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 373 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 314 bp overlap
SMARCC1 1 dataset
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 227 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 402 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 289 bp overlap
TAL1::TCF3 2 datasets
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_72h DE_72h-TAL1TCF3_MA0091.2 10 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TFAP4 2 datasets
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1575.2 17 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 344 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 260 bp overlap
Tcf12 2 datasets
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 2 datasets
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Twist2 2 datasets
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZBTB18 2 datasets
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZNF16 1 dataset
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF341 2 datasets
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap
ZNF354A 2 datasets
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF677 2 datasets
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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