chr12 : 70,919,685 – 70,920,044
359 bp 54 TFs 1 linked gene
This 359 bp open chromatin element is linked to PTPRR and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTPRR 693 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:70,914,685 – 70,925,044
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 4 datasets
ChIP A-375 GSE116189.AR.A-375 358 bp overlap
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 290 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 229 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 137 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 109 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 231 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 205 bp overlap
BRD4 2 datasets
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 125 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 155 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 190 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 157 bp overlap
CREB1 6 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 176 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 174 bp overlap
ChIP LNCaP GSE63034.CREB1.LNCaP 121 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 257 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 319 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 209 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 254 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 92 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 186 bp overlap
FOXC1 2 datasets
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 133 bp overlap
FOXO1::ELK1 1 dataset
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
HOXB13 2 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 59 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 298 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 302 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 230 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 191 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 128 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 75 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 224 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 267 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 249 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 156 bp overlap
PKNOX1 5 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 291 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 151 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 271 bp overlap
ChIP MCF-7 ENCFF116OCS 192 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 312 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Pparg::Rxra 1 dataset
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 165 bp overlap
REST 62 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 359 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 271 bp overlap
ChIP A549 ENCFF148AIS 275 bp overlap
ChIP A549 ENCFF148AIS 339 bp overlap
ChIP GM12878 ENCFF235NGC 170 bp overlap
ChIP GM12878 ENCFF943QPB 149 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 215 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 210 bp overlap
ChIP GM23338 ENCFF024TCL 143 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 265 bp overlap
ChIP GP5D GSE51234.REST.GP5D 359 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 359 bp overlap
ChIP H1 ENCFF203SWY 253 bp overlap
ChIP H1 ENCFF429RUE 202 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 359 bp overlap
ChIP HCT116 ENCFF929AYY 139 bp overlap
ChIP HEK293 ENCFF073DOT 137 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 303 bp overlap
ChIP HL-60 ENCFF589LOF 190 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 359 bp overlap
ChIP HeLa-S3 ENCFF911DTC 176 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 359 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 359 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 138 bp overlap
ChIP HepG2 ENCFF122AWR 132 bp overlap
ChIP Ishikawa ENCFF456OHV 263 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 359 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 359 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 359 bp overlap
ChIP K-562 GSE70482.REST.K-562 286 bp overlap
ChIP K562 ENCFF430APM 160 bp overlap
ChIP K562 ENCFF688UKW 287 bp overlap
ChIP K562 ENCFF758CZL 359 bp overlap
ChIP MCF-7 ENCFF893RRD 226 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 359 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 194 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 221 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 359 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 359 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 290 bp overlap
ChIP PFSK-1 ENCFF845VHA 178 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 359 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 198 bp overlap
ChIP Panc1 ENCFF518EEQ 141 bp overlap
ChIP Panc1 ENCFF518EEQ 344 bp overlap
ChIP Panc1 ENCFF629OJO 201 bp overlap
ChIP SK-N-SH ENCFF635KBN 179 bp overlap
ChIP SK-N-SH ENCFF861MKH 184 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 222 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 293 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 359 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 191 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 251 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 206 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 209 bp overlap
ChIP liver ENCFF240FWT 82 bp overlap
ChIP liver ENCFF577AZT 139 bp overlap
ChIP liver ENCSR893QWP.REST.liver 322 bp overlap
ChIP liver ENCSR867WPH.REST.liver 277 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 359 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 86 bp overlap
ChIP neural ENCSR000BTV.REST.neural 103 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 152 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 321 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 284 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 279 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 134 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 73 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 172 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 171 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 184 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 142 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 92 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 195 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 195 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 195 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 166 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 65 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 272 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 274 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 218 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 268 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 190 bp overlap
SP2 1 dataset
ChIP HEK293T ERP007114.SP2.HEK293T 292 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 179 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 182 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 168 bp overlap
ChIP A549 ENCFF243FTL 198 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 238 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 137 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 86 bp overlap
ZNF384 7 datasets
ChIP GM12878 ENCFF229VSP 162 bp overlap
ChIP HEK293T ENCFF019DZX 156 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 160 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 199 bp overlap
ChIP HepG2 ENCFF129PLC 165 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 127 bp overlap
ChIP K562 ENCFF365NXQ 186 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
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