chr12 : 39,669,478 39,670,021
543 bp 60 TFs 0 linked genes
This 543 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:39,664,478 – 39,675,021
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
CTCF 27 datasets
ChIP 22Rv1 ENCFF466OXN 429 bp overlap
ChIP A549 ENCFF034FVO 199 bp overlap
ChIP A549 ENCFF182TCQ 127 bp overlap
ChIP A549 ENCFF434LUY 124 bp overlap
ChIP BE2C ENCFF757SRF 165 bp overlap
ChIP C4-2B ENCFF821XVN 454 bp overlap
ChIP Caco-2 ENCFF934QYS 124 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 118 bp overlap
ChIP H1 ENCFF414GZI 126 bp overlap
ChIP H1 ENCFF764RHO 161 bp overlap
ChIP H9 ENCFF152GTF 332 bp overlap
ChIP HepG2 ENCFF348BUL 113 bp overlap
ChIP HepG2 ENCFF757EKU 200 bp overlap
ChIP K562 ENCFF111MGE 125 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 97 bp overlap
ChIP MCF-7 ENCFF139NQI 156 bp overlap
ChIP MCF-7 ENCFF162GNE 150 bp overlap
ChIP MCF-7 ENCFF414SZG 122 bp overlap
ChIP MCF-7 ENCFF494VXA 142 bp overlap
ChIP MCF-7 ENCFF844STM 110 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 117 bp overlap
ChIP OCI-LY1 ENCFF455ESK 214 bp overlap
ChIP OCI-LY1 ENCFF455ESK 451 bp overlap
ChIP VCaP ENCFF858YQT 90 bp overlap
ChIP endodermal cell ENCFF471YCZ 352 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 4 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 213 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-2 535 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 2 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 2 datasets
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
ChIP WTC11 ENCFF708TAF 377 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 255 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 275 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 471 bp overlap
RAD21 4 datasets
ChIP A549 ENCFF047SFC 151 bp overlap
ChIP H1 ENCFF698EWO 132 bp overlap
ChIP HepG2 ENCFF906QIS 136 bp overlap
ChIP MCF-7 ENCFF724VCQ 175 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 186 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCFF942LFP 340 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 411 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 242 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCFF468FCG 385 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap