chr1 : 187,877,280 – 187,877,548
268 bp 56 TFs 0 linked genes
This 268 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:187,872,280 – 187,882,548
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 210 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 226 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 172 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 256 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 268 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 209 bp overlap
BRD4 10 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 137 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 261 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 268 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 268 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 268 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 184 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 249 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 268 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 182 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 191 bp overlap
Bcl11B 2 datasets
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 255 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 259 bp overlap
ELF1 2 datasets
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 192 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 268 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 268 bp overlap
ESR1 23 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 259 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 262 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 237 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 268 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 268 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 235 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 268 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 268 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 247 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 113 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 227 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 268 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 268 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 268 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 206 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 268 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 268 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 268 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 268 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 268 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 268 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 245 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 238 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 231 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 268 bp overlap
ChIP DE DE-FOXA2-2 268 bp overlap
FOXC2 2 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 268 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 268 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 268 bp overlap
ChIP DE DE-GATA4-2 268 bp overlap
ChIP foregut GSE117136.GATA4.foregut 268 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 268 bp overlap
ChIP DE DE-GATA6-2 268 bp overlap
ChIP foregut GSE117136.GATA6.foregut 257 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 228 bp overlap
Hic1 2 datasets
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
Ikzf3 2 datasets
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
MAF 2 datasets
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
MAFA 2 datasets
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
MAX 5 datasets
ChIP Ishikawa ENCFF064TDQ 268 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 232 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 231 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 268 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 268 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 181 bp overlap
MSC 2 datasets
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 268 bp overlap
MYF6 2 datasets
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 2 datasets
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 214 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 268 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 268 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 268 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 227 bp overlap
Prdm14 2 datasets
Motif DE_48h DE_48h-Prdm14_MA1998.2 8 bp overlap
Motif DE_60h DE_60h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 2 datasets
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 268 bp overlap
SCRT1 2 datasets
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_48h DE_48h-SCRT2_MA0744.3 10 bp overlap
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 268 bp overlap
SNAI2 2 datasets
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 212 bp overlap
SRF 1 dataset
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 124 bp overlap
TAF1 1 dataset
ChIP Ishikawa ENCSR000BTO.TAF1.Ishikawa 108 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TCF12 5 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP Ishikawa ENCFF467DDW 268 bp overlap
ChIP Ishikawa ENCFF467DDW 137 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 268 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 227 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 86 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 268 bp overlap
YY1 3 datasets
ChIP Ishikawa ENCFF505XQX 268 bp overlap
ChIP Ishikawa ENCFF505XQX 83 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 245 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCFF191NFH 268 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 224 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF213 2 datasets
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF317 1 dataset
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF692 2 datasets
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Huangfu Lab · Publications · Resources · Contact